Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H3L95_RS02255 Genome accession   NZ_CP059566
Coordinates   454331..455710 (-) Length   459 a.a.
NCBI ID   WP_003755373.1    Uniprot ID   C6M115
Organism   Neisseria sicca strain DSM 17713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 449331..460710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS02240 (H3L95_02240) - 450916..451842 (-) 927 WP_003755377.1 hypothetical protein -
  H3L95_RS02245 (H3L95_02245) - 451979..453151 (-) 1173 WP_003755376.1 NYN domain-containing protein -
  H3L95_RS02250 (H3L95_02250) - 453219..454205 (-) 987 WP_003755375.1 malate dehydrogenase -
  H3L95_RS02255 (H3L95_02255) radA 454331..455710 (-) 1380 WP_003755373.1 DNA repair protein RadA Machinery gene
  H3L95_RS02260 (H3L95_02260) - 455805..457307 (-) 1503 WP_003755371.1 S41 family peptidase -
  H3L95_RS02265 (H3L95_02265) - 457572..459326 (-) 1755 WP_040667867.1 murein hydrolase activator EnvC -
  H3L95_RS02270 (H3L95_02270) - 459510..460154 (-) 645 WP_003755368.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49543.02 Da        Isoelectric Point: 6.8217

>NTDB_id=470721 H3L95_RS02255 WP_003755373.1 454331..455710(-) (radA) [Neisseria sicca strain DSM 17713]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNEKEFPNLKIFGVSSLQETIEICRDAEN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=470721 H3L95_RS02255 WP_003755373.1 454331..455710(-) (radA) [Neisseria sicca strain DSM 17713]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGTACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCACCCGAACCGAAAAACGCCCGCTTCCAATCTTGGGCAGCGG
ATACCTCAACCGTCCAATCCCTATCCGCCGTGACTGCCACCGAAGTGCCGCGCAATCCGACGGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTGTACGTTTCCGGTGAAGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCGACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACCTCCGCCCCAGG
TTCCGTGTCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGTATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGTGCGATCGCCGGCCCACGCGTACTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGCTCGT
GTGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTCTGGTCGAAATTCAGGCATTGGTTGATGATGCGCACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTTGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGTTTTGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGAGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGTTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTTGCCTTCGGCGAAATCGGCCTAAGCGGCGAA
GTCCGTCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGAAAAAGAGTTTCCGAATCTAAAAATCTTCGGCGTTTCCAGCCTTCAGGAAACCATCGAAATCT
GCCGCGATGCGGAAAATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

99.129

0.495
  radA Streptococcus mitis NCTC 12261

47.368

99.346

0.471
  radA Streptococcus mitis SK321

47.149

99.346

0.468
  radA Streptococcus pneumoniae TIGR4

46.827

99.564

0.466
  radA Streptococcus pneumoniae D39

46.827

99.564

0.466
  radA Streptococcus pneumoniae Rx1

46.827

99.564

0.466
  radA Streptococcus pneumoniae R6

46.827

99.564

0.466