Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   H3L96_RS10740 Genome accession   NZ_CP059565
Coordinates   2256638..2258368 (-) Length   576 a.a.
NCBI ID   WP_009116966.1    Uniprot ID   G4CRW5
Organism   Neisseria wadsworthii strain DSM 22245     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251638..2263368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS12350 (H3L96_10700) - 2252096..2252752 (-) 657 Protein_2090 OB-fold-containig protein -
  H3L96_RS10715 (H3L96_10705) - 2252807..2253271 (-) 465 WP_009116960.1 hypothetical protein -
  H3L96_RS10720 (H3L96_10710) - 2253318..2253984 (-) 667 Protein_2092 PspA/IM30 family protein -
  H3L96_RS10725 (H3L96_10715) - 2254024..2254520 (-) 497 Protein_2093 hypothetical protein -
  H3L96_RS10730 (H3L96_10720) - 2254917..2256440 (+) 1524 WP_040667074.1 sodium-dependent transporter -
  H3L96_RS10735 (H3L96_10725) - 2256437..2256529 (+) 93 WP_040667075.1 methionine/alanine import family NSS transporter small subunit -
  H3L96_RS10740 (H3L96_10730) recD 2256638..2258368 (-) 1731 WP_009116966.1 exodeoxyribonuclease V subunit alpha Machinery gene
  H3L96_RS10745 (H3L96_10735) - 2258578..2259720 (+) 1143 WP_009116967.1 extracellular solute-binding protein -
  H3L96_RS10750 (H3L96_10740) - 2259954..2261081 (+) 1128 WP_182073190.1 aminotransferase class V-fold PLP-dependent enzyme -
  H3L96_RS10755 (H3L96_10745) - 2261225..2261905 (+) 681 WP_009116970.1 epoxyqueuosine reductase QueH -
  H3L96_RS10760 (H3L96_10750) - 2262105..2262953 (-) 849 WP_009116971.1 ferritin-like domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 62836.22 Da        Isoelectric Point: 6.1238

>NTDB_id=470716 H3L96_RS10740 WP_009116966.1 2256638..2258368(-) (recD) [Neisseria wadsworthii strain DSM 22245]
MDSLVLDGFAAEAAVSLLERVAPEVGGVVSPFVDKLFAALAEGHSFIWLDKHDIAALKQARPVVGGDAGSPLILRGNKLF
LGKMWQLEQDLARQILRIAAVKPEPVDWLNASHHLADWFSEPGSRDQKAAAALALLQNFMVISGGPGTGKTTTVAKLLAL
LCVNAGKLPRIALVAPTGKAAAHMAKALHRALGQFNAGAAIKAHLEHLEGQTVHRLLKFKPPYMQPAYHADNPLPLDMIV
VDEASMLDTALLLQLLSAVPDGCRVIILGDENQLPSVGAGAVLAALARQTVLTETTAQELTDLLPEQPFAVSDRPDPLAA
NIARLTISHRFGEYSGIGCLARAVVQGNVEDALAQFERFPNEIRIHDMNIDGQLETLYRLQQNYWQAVAQNDVKAAFGHQ
ADCMVLAAWRNNAEHFNQAYQAYLKKIGIIKQEEYWFAGQMLMVSRNDYTLDLFNGDIGLVLRDDASDTGALAAYFPDGD
EFRKIALSRLPECETAFAMTVHKSQGSEYKEVWLLPPMGYDLAKTAGAGLNRALLYTAITRARERFVFLGKTEAFKAACL
QEETRRSAVREMLAEG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=470716 H3L96_RS10740 WP_009116966.1 2256638..2258368(-) (recD) [Neisseria wadsworthii strain DSM 22245]
ATGGATTCTTTGGTGCTTGATGGTTTTGCTGCCGAAGCGGCCGTGAGCTTGCTGGAGCGGGTTGCGCCCGAAGTGGGTGG
TGTGGTGTCGCCTTTTGTCGATAAGCTTTTTGCAGCTTTGGCGGAAGGCCATTCATTTATTTGGCTGGATAAGCATGATA
TCGCCGCGTTGAAACAGGCCCGGCCCGTCGTAGGCGGAGATGCCGGCAGCCCGCTGATTTTAAGGGGAAACAAGCTTTTT
TTAGGCAAAATGTGGCAGCTTGAGCAGGATTTGGCACGGCAGATTCTGCGTATTGCCGCAGTGAAACCGGAGCCGGTGGA
TTGGTTGAACGCATCGCACCATTTGGCAGACTGGTTTTCCGAGCCCGGCAGTCGGGATCAGAAAGCGGCGGCGGCGTTGG
CTTTGCTGCAAAATTTTATGGTCATCAGCGGCGGGCCGGGTACGGGCAAGACCACTACGGTGGCCAAATTGCTGGCTTTG
CTGTGTGTGAACGCGGGCAAATTGCCGCGCATTGCTTTGGTGGCGCCGACGGGCAAGGCTGCGGCGCATATGGCTAAAGC
ATTGCACCGCGCGTTGGGACAGTTTAATGCCGGAGCGGCGATTAAGGCGCATCTGGAACACTTGGAAGGGCAAACGGTGC
ACCGTTTGCTTAAGTTCAAGCCGCCTTATATGCAGCCGGCTTATCATGCCGATAATCCGCTTCCGTTGGATATGATTGTG
GTGGACGAGGCGTCGATGCTGGATACGGCGCTGTTGTTGCAGCTTTTATCCGCCGTGCCTGACGGATGCAGGGTGATTAT
ATTGGGTGATGAAAACCAATTGCCTTCCGTGGGTGCGGGCGCAGTTTTGGCTGCACTTGCCAGGCAAACGGTGCTAACAG
AAACCACCGCGCAGGAGCTTACTGATTTGTTGCCGGAGCAGCCGTTTGCCGTTTCAGACAGGCCTGATCCTTTGGCTGCA
AATATCGCGCGTTTAACCATCAGCCACCGGTTCGGCGAGTACAGCGGCATCGGCTGCTTAGCGCGTGCGGTTGTGCAAGG
AAATGTGGAAGATGCGCTGGCTCAGTTTGAGCGGTTTCCAAACGAAATCCGTATTCACGATATGAATATTGACGGGCAGC
TTGAAACTTTATACCGCTTGCAGCAAAACTACTGGCAGGCCGTGGCGCAAAATGATGTGAAAGCGGCTTTCGGGCATCAG
GCGGACTGTATGGTTTTGGCCGCATGGCGCAATAATGCGGAGCATTTCAATCAAGCCTATCAGGCCTATCTGAAAAAAAT
CGGCATTATCAAGCAAGAAGAGTATTGGTTTGCAGGGCAGATGCTGATGGTAAGCCGCAATGATTATACGCTCGACTTGT
TTAATGGCGACATCGGCTTGGTGCTGCGTGATGATGCATCTGATACCGGTGCGCTGGCAGCCTATTTCCCGGATGGAGAT
GAATTTCGCAAGATCGCCTTGAGCCGCTTGCCGGAATGCGAAACGGCGTTTGCGATGACCGTGCATAAAAGCCAGGGTTC
GGAATATAAAGAAGTGTGGCTGTTGCCGCCTATGGGGTATGACTTGGCGAAAACGGCCGGCGCCGGATTGAACCGGGCTT
TGCTTTACACGGCGATTACCCGGGCGCGGGAGCGTTTTGTGTTTTTGGGCAAAACGGAAGCTTTTAAAGCTGCGTGTTTG
CAGGAAGAGACGCGCAGAAGTGCGGTGAGGGAGATGCTGGCGGAGGGGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-546)

AAA domain (AAA_30)

(124-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CRW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

55.437

97.396

0.54