Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   H3L96_RS08515 Genome accession   NZ_CP059565
Coordinates   1799373..1802606 (-) Length   1077 a.a.
NCBI ID   WP_009116489.1    Uniprot ID   G4CQI8
Organism   Neisseria wadsworthii strain DSM 22245     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794373..1807606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS08495 (H3L96_08485) - 1795265..1795864 (-) 600 WP_009116485.1 hypothetical protein -
  H3L96_RS08500 (H3L96_08490) - 1795913..1796887 (-) 975 WP_009116486.1 PhoH family protein -
  H3L96_RS08505 (H3L96_08495) - 1797110..1798357 (+) 1248 WP_040666979.1 DUF2254 family protein -
  H3L96_RS08510 (H3L96_08500) - 1798565..1799266 (+) 702 WP_040667507.1 thioredoxin domain-containing protein -
  H3L96_RS08515 (H3L96_08505) recC 1799373..1802606 (-) 3234 WP_009116489.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H3L96_RS08520 (H3L96_08510) - 1802805..1803269 (-) 465 WP_040667509.1 Lrp/AsnC family transcriptional regulator -
  H3L96_RS08525 (H3L96_08515) rarD 1803417..1804328 (+) 912 WP_009116491.1 EamA family transporter RarD -
  H3L96_RS08530 (H3L96_08520) - 1804399..1805406 (-) 1008 WP_009116492.1 LLM class flavin-dependent oxidoreductase -
  H3L96_RS08535 (H3L96_08525) pta 1805662..1807143 (+) 1482 WP_009116493.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 1077 a.a.        Molecular weight: 121872.42 Da        Isoelectric Point: 6.2391

>NTDB_id=470710 H3L96_RS08515 WP_009116489.1 1799373..1802606(-) (recC) [Neisseria wadsworthii strain DSM 22245]
MLYLYQSNRLEDLAELLQAVKTRQPLRHLLASEEIIVQSQGMRRFLSRHLARETGIAANLKFSLPAGLAWRLMRDTLPDI
PALNPFSPEVMRWRLLGLFSDRHFHHAPEFALSRAALGTYLQRGGNAAYQLAGQMADIFDQYLIYRADWLDTWQAGKMLG
LGDDEAWQAELWRFLDDGSQTAPHRAALWQQFLGALDKAKLPERFFVFGIATLAPLYLELLQALSQHCDIHVFALNPSSE
YWGNIIEPAQILKNGTDIDLSQSGHPLLASLGKQGRDFFDALIEAGAQTELAVYSDAAASESLLHRLQHDIQTLSLPAAA
ETPSEPDGSIRIVSAHSPLRELQILKDHILRVLNEHPGWQPHDIAVLTPNIEPYSPYIEAVFGRQTGGGQALPYSVSDVK
LSRRQPLLHALEQTLELLESRFETDKVLPLLENETVLRRFGLSRQDLPLLHETVAQLNIHWGMGGEMRGGRDTLFTWQQG
LDRLVLGWMMPGNTGTLWQNISALPGNLNLLEPLSRFAAFIRTLANIRRDWQQAADVPEWTQRVRRLTTRLFQPESGDQH
AVQQIEQALAQWQEEAALAGFRQALPQHTAIHHITRFLESRSEAGFLRSGITFCSMVPMRSLPFKMLCLIGLNDTDFPRN
TRASGFDLIARHPRKGDRARRDDDRYLFLEALMSAREILYLSYQGRSIQNNDLLAPSALLPELIDTLSAMTGLPPEQLSE
QMIENHPLQAFSPQYFVSDRHYTSSRSDYAEALNRPQKPVQPFFSRPLAEPETACTVSHGRLIQFWRNPVRAWLQQNLNW
REPYIDEAWDSAEPFTPEHSGRITAEYTAARRHNQDFNRTAERLAAESMLPAGELGKLWRNEFEAKAKSLDTALVQSPKL
HSVPYTLTLGKHTLEGSLGKLYRHGLIDFQNEQPNAPRQIELMLEHLIFNAVRPDGTESFQSHWLLPGNPTILPEIPQEK
AQSLLTLWLDYYVLGQTRPLPFLPKTNLAAAKAWLNPGKDDPADKAKKEAYKAYNGSKMSTGQREYTEVDLVFGSAGEAP
PEQQLFWTLTEQMLVPTLSACPCLQKNEGNKTETEAE

Nucleotide


Download         Length: 3234 bp        

>NTDB_id=470710 H3L96_RS08515 WP_009116489.1 1799373..1802606(-) (recC) [Neisseria wadsworthii strain DSM 22245]
ATGCTTTATCTTTACCAATCCAACCGCCTCGAAGACCTTGCCGAGCTTTTGCAGGCTGTCAAAACGCGCCAACCTTTGCG
CCACCTGCTCGCCTCGGAAGAAATCATCGTGCAGAGCCAGGGCATGCGGCGATTTCTCAGCAGGCATCTGGCGCGCGAAA
CCGGTATCGCCGCCAACCTCAAATTCAGCCTGCCCGCCGGCCTGGCTTGGCGGCTGATGCGCGACACCTTGCCCGACATC
CCCGCGCTCAACCCGTTTTCCCCCGAAGTGATGCGCTGGCGGCTGCTCGGTTTGTTTTCAGACAGGCATTTCCATCATGC
CCCCGAGTTTGCACTCAGCCGCGCCGCACTCGGCACCTACCTGCAACGCGGCGGCAATGCTGCCTACCAACTGGCTGGTC
AGATGGCCGATATTTTCGACCAATACCTGATTTACCGCGCCGACTGGCTGGATACCTGGCAGGCTGGCAAAATGCTCGGG
CTGGGCGACGACGAAGCCTGGCAAGCGGAGCTTTGGCGCTTTCTCGACGACGGCTCTCAAACTGCGCCGCACCGTGCTGC
CTTGTGGCAGCAGTTTCTCGGCGCACTGGATAAAGCCAAGCTGCCCGAACGCTTTTTCGTGTTCGGCATCGCCACCCTCG
CGCCGCTTTATCTGGAGCTGCTGCAAGCCCTGTCACAACATTGCGACATCCATGTTTTCGCCCTCAACCCGAGCAGCGAA
TACTGGGGCAACATCATCGAGCCGGCGCAAATCCTCAAAAACGGCACCGACATTGATTTAAGCCAAAGCGGCCATCCGCT
GCTGGCTTCACTCGGCAAACAAGGGCGCGACTTTTTCGACGCGCTGATAGAAGCGGGCGCGCAAACCGAGCTGGCCGTTT
ATTCCGATGCCGCCGCGTCCGAAAGCCTGCTGCACCGCCTGCAACACGACATCCAAACCCTTAGCCTGCCCGCCGCTGCG
GAAACACCGTCCGAACCCGACGGCAGCATCCGCATCGTGTCCGCCCACAGCCCCTTGCGCGAATTGCAGATTCTCAAAGA
CCACATCCTGCGCGTTTTAAACGAGCACCCGGGCTGGCAGCCGCACGACATCGCCGTGCTCACCCCCAACATCGAACCGT
ACAGCCCCTATATCGAAGCCGTATTCGGCCGCCAAACCGGCGGCGGCCAAGCTTTGCCCTATTCCGTTTCCGACGTCAAA
CTCAGCCGCCGCCAGCCGCTTTTACACGCGCTGGAACAAACGCTGGAATTACTGGAAAGCCGCTTTGAAACCGACAAAGT
ACTGCCGCTTTTGGAAAACGAAACCGTGCTGCGCCGCTTCGGCCTCAGCCGCCAAGACCTGCCGCTGCTGCACGAAACCG
TGGCGCAGCTCAACATCCATTGGGGCATGGGCGGCGAGATGCGCGGCGGCAGAGACACCTTGTTCACTTGGCAGCAGGGG
CTCGACCGCTTGGTGCTCGGCTGGATGATGCCCGGCAACACCGGCACCTTGTGGCAAAACATCAGTGCCCTGCCCGGCAA
CTTAAACCTGCTCGAACCACTAAGCCGTTTCGCCGCCTTCATCCGCACTTTGGCAAACATCCGGCGCGATTGGCAGCAGG
CGGCCGACGTGCCCGAGTGGACACAACGCGTGCGCCGCCTGACAACGCGTCTGTTCCAACCCGAAAGCGGCGACCAACAT
GCCGTGCAGCAAATCGAACAAGCACTTGCCCAATGGCAGGAAGAAGCCGCATTGGCCGGTTTCAGACAGGCATTGCCACA
ACACACTGCCATCCACCACATCACCCGTTTTCTCGAAAGCCGCAGCGAAGCCGGCTTCCTGCGCAGCGGCATCACCTTTT
GCAGCATGGTGCCGATGCGCAGCCTGCCCTTTAAAATGCTCTGCCTTATCGGCCTGAACGACACCGACTTCCCGCGCAAC
ACCCGCGCTTCCGGCTTCGACCTGATTGCCCGCCATCCGCGCAAAGGCGACCGCGCCCGCCGCGACGATGACCGCTATCT
CTTCCTCGAAGCCCTGATGAGCGCGCGCGAAATCCTCTATCTTTCCTATCAAGGCCGCAGCATACAGAATAACGACCTGC
TCGCCCCTTCCGCCCTGCTGCCCGAACTTATCGACACCCTCTCCGCCATGACCGGCCTGCCGCCCGAACAATTGTCGGAG
CAAATGATTGAAAACCACCCGCTGCAAGCCTTTTCACCGCAATACTTTGTTTCAGACAGGCATTACACCAGCAGCCGCAG
CGACTATGCCGAAGCGCTCAACCGCCCGCAAAAACCCGTGCAGCCGTTTTTCAGCCGACCTTTGGCCGAACCCGAAACCG
CCTGCACCGTCAGCCACGGCCGCCTGATACAGTTTTGGCGCAATCCCGTGCGCGCGTGGCTGCAGCAAAACCTCAACTGG
CGCGAGCCTTACATTGATGAAGCTTGGGATTCCGCCGAGCCTTTCACGCCCGAGCACTCGGGCCGCATCACCGCCGAATA
CACCGCCGCCCGCCGCCACAATCAAGATTTCAACCGCACCGCCGAGCGGCTGGCCGCCGAAAGCATGCTGCCCGCGGGCG
AGTTGGGCAAACTTTGGCGCAACGAATTCGAAGCCAAAGCCAAATCACTCGATACTGCGTTGGTGCAAAGCCCCAAGCTG
CACTCCGTGCCCTACACGCTCACGCTCGGCAAACACACGCTGGAAGGCAGCCTCGGCAAACTTTACCGTCACGGGCTGAT
TGATTTTCAAAACGAACAGCCCAACGCCCCGCGCCAGATAGAGCTGATGCTGGAGCACCTGATTTTCAACGCCGTTCGCC
CCGACGGCACGGAAAGCTTCCAAAGCCACTGGCTTCTGCCCGGCAATCCGACCATCCTGCCCGAAATTCCGCAGGAAAAA
GCCCAAAGCCTGCTCACCCTTTGGCTGGATTACTACGTTCTCGGCCAAACCCGGCCGCTGCCCTTCCTCCCCAAAACCAA
CCTTGCCGCCGCCAAAGCATGGTTAAACCCCGGTAAAGACGATCCTGCCGACAAAGCCAAAAAAGAAGCCTATAAAGCCT
ACAACGGCTCCAAAATGAGCACCGGTCAGCGCGAATATACCGAAGTGGATCTGGTGTTCGGTTCCGCAGGCGAAGCGCCG
CCGGAGCAGCAGCTTTTTTGGACGCTCACAGAGCAAATGCTCGTTCCCACATTAAGCGCCTGCCCCTGCTTGCAGAAAAA
TGAAGGTAATAAAACCGAAACCGAAGCCGAATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(776-993)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CQI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

57.953

99.814

0.578