Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   H3L96_RS08455 Genome accession   NZ_CP059565
Coordinates   1785848..1789453 (+) Length   1201 a.a.
NCBI ID   WP_182073171.1    Uniprot ID   -
Organism   Neisseria wadsworthii strain DSM 22245     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1780848..1794453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS08420 (H3L96_08410) - 1782296..1782598 (+) 303 WP_040666975.1 integration host factor subunit alpha -
  H3L96_RS08425 (H3L96_08415) - 1782582..1782911 (+) 330 WP_009116470.1 hypothetical protein -
  H3L96_RS08435 (H3L96_08425) - 1783091..1783447 (-) 357 WP_009116471.1 bile acid:sodium symporter -
  H3L96_RS08440 (H3L96_08430) cueR 1783496..1783885 (-) 390 WP_009116472.1 Cu(I)-responsive transcriptional regulator -
  H3L96_RS12315 (H3L96_08435) - 1784293..1785054 (+) 762 WP_182073170.1 DUF305 domain-containing protein -
  H3L96_RS08450 (H3L96_08440) - 1785221..1785703 (-) 483 Protein_1653 IS1595 family transposase -
  H3L96_RS08455 (H3L96_08445) recB 1785848..1789453 (+) 3606 WP_182073171.1 exodeoxyribonuclease V subunit beta Machinery gene
  H3L96_RS08460 (H3L96_08450) - 1789610..1790017 (+) 408 WP_040666977.1 hypothetical protein -
  H3L96_RS08465 (H3L96_08455) - 1790081..1791211 (-) 1131 WP_009116478.1 M14-type cytosolic carboxypeptidase -
  H3L96_RS08470 (H3L96_08460) - 1791248..1791388 (-) 141 WP_156792975.1 hypothetical protein -
  H3L96_RS08475 (H3L96_08465) - 1791374..1792318 (+) 945 WP_009116480.1 class I SAM-dependent methyltransferase -
  H3L96_RS08480 (H3L96_08470) - 1792354..1792581 (+) 228 WP_040667505.1 hypothetical protein -
  H3L96_RS08485 (H3L96_08475) - 1792618..1793757 (+) 1140 WP_009116482.1 glycerate kinase -

Sequence

Protein


Download         Length: 1201 a.a.        Molecular weight: 135016.24 Da        Isoelectric Point: 5.1743

>NTDB_id=470709 H3L96_RS08455 WP_182073171.1 1785848..1789453(+) (recB) [Neisseria wadsworthii strain DSM 22245]
MQSHIAAFDPLAIPIQGTNLIEASAGTGKTFGIAALFTRLVLLEKMSVEGILVVTFTKAATAELKTRLRSRLDEALRWLE
KPDDQKPLIDDFLRELLDKALSREQKALLVLRLKAAISQFDNAAIYTIHGFCQRLLRDYAFFCQVPFDMELETDGDERLL
TAAQDFWREQVAHDSEMARLVFEHNLTPESVLAKMRTYIGRPMLRYGINEVDSAESEAELSKVWAKVCAGLTELEAIFKQ
VYSVINKKTYSLKSMQELFAALQQDATNQCLSEKKELYKKHLPKFDLEILKSNVNKGKTLNENADKLGLLADLGRAIEAK
RAAEQAAIAALQLEFLNYMKDAVALRKQTHRERGYDDLLLDVYAALDENSPHSGALAEMVADTWQVALIDEFQDTDPLQY
GIFQKTFIRHGNPLFLVGDPKQAIYSFRGADIHAYLKAAKDADHHYTLAKNYRSHDSLIKSISLFFRQKTHPFVLKGIDY
TDVSAARADACLKPVNHALRVRWLNEDGEASLSKEVLRSRAAEYCANEIAAMLNRAAEGVLNLKTRPLQSGDIAVLVRTR
DEGSMIGAALKARGIQSVLLQRHSVFAEKEARAVAALLAFWLRPQETETLRFVLGSVLFGQTAEQLYALNQNEHQLLDYI
NAAQTALATWQKHGIYPAMQQFAARYDLEGGLLSARNERSLTNYHQIVELLAEEDERSRSPESLHQWLKAQISEAQNGKE
AGENKTLRLESDEALVKIVTMHASKGLQYPVVFCPFVWDAADYKTEDWQVINRETGSQLVSALELIDEDKNALADEELGE
RLRLLYVAMTRAEEQLTIYAAYFNGSARNTFSYLLAGSEEATRAEIEAEYAAEKKTNKAEGEKKMLLQNWQRLIQNAPED
TDIAWLQGAPETAGVRPQAYSENRFQAWTPPARAFEHIRHTSFTGLLRDLSAAAAPEREELQPAVDAAEAGLAQSNLAES
LSENRMVGDDVYDIHHFPRGTHAGVCLHELLEHFEFNRPASEQQAQIVETLARYGFGEEWLDAVCGMLDKAAHAELFNRL
ALADLPARNRLPEMDFMLKVEEFSPAGLKAWFARPNLALPPGCIAVAQHLDFDTVKGFLSGFIDMTCIDGEGNVCVIDYK
SNYLGAGQQAYTQDAMDEAMAAHHYYLQAMIYAVAVARYLQQQNAEFNTICVRYLFLRGLGSEDGGVWRWQLDKADLQEW
L

Nucleotide


Download         Length: 3606 bp        

>NTDB_id=470709 H3L96_RS08455 WP_182073171.1 1785848..1789453(+) (recB) [Neisseria wadsworthii strain DSM 22245]
ATGCAATCCCATATCGCCGCTTTTGATCCGCTGGCCATTCCTATTCAAGGTACAAACCTTATCGAAGCTTCTGCCGGTAC
AGGCAAAACTTTTGGTATAGCTGCTTTATTTACCCGATTGGTTTTGCTGGAGAAAATGTCGGTTGAGGGTATTCTGGTGG
TAACGTTTACCAAAGCGGCTACGGCGGAATTGAAAACCCGTTTGCGTTCGCGTTTGGATGAAGCGCTCCGCTGGCTGGAA
AAGCCGGATGATCAGAAGCCTTTGATTGACGATTTTCTCCGCGAGCTGTTGGACAAAGCATTAAGTCGGGAGCAGAAAGC
GCTGTTGGTTTTGCGCTTGAAAGCGGCGATTTCGCAGTTTGATAATGCGGCGATATATACCATACACGGGTTTTGCCAGC
GTTTGTTGCGCGATTACGCATTTTTTTGCCAAGTGCCGTTTGATATGGAACTGGAAACCGACGGTGATGAGCGTTTATTA
ACGGCGGCACAGGATTTTTGGCGCGAACAGGTGGCGCATGATTCTGAGATGGCGCGTTTGGTGTTTGAACATAATCTCAC
GCCAGAGTCGGTGCTTGCTAAAATGCGCACTTATATCGGCAGGCCTATGTTGCGGTATGGGATAAACGAGGTGGATTCGG
CAGAAAGCGAAGCCGAACTGTCAAAAGTATGGGCAAAAGTGTGCGCAGGATTAACGGAGCTGGAAGCAATATTTAAGCAA
GTTTATTCTGTAATCAATAAAAAAACATATTCACTGAAAAGTATGCAAGAGTTGTTTGCAGCTTTGCAGCAGGATGCGAC
AAACCAATGCCTGTCTGAAAAAAAAGAACTGTATAAAAAGCATTTGCCGAAATTTGATTTGGAAATTTTAAAAAGCAATG
TCAACAAAGGCAAAACGCTGAATGAAAATGCCGATAAGTTAGGCCTTTTGGCCGATTTAGGTCGGGCCATCGAAGCCAAG
CGAGCTGCGGAGCAGGCCGCCATTGCCGCATTGCAGCTGGAGTTTTTAAACTACATGAAAGACGCTGTTGCGTTGCGCAA
GCAAACACATCGGGAGCGGGGTTATGACGATTTGCTGCTGGATGTTTATGCCGCACTCGATGAAAACAGTCCGCACAGCG
GGGCTTTGGCCGAGATGGTTGCCGACACTTGGCAGGTGGCGCTGATTGATGAATTTCAAGATACCGATCCGCTGCAATAC
GGCATTTTCCAAAAAACATTTATCCGACACGGCAATCCTTTATTTTTGGTAGGCGATCCCAAGCAGGCGATTTACAGCTT
TAGGGGGGCGGACATTCATGCCTATCTGAAAGCGGCGAAAGATGCCGACCATCACTATACTTTAGCGAAAAACTACCGCA
GTCACGACTCGCTGATAAAAAGCATCAGCCTGTTTTTCCGGCAGAAAACCCACCCTTTTGTACTCAAAGGCATTGATTAC
ACCGATGTGTCGGCGGCGCGCGCCGATGCCTGTCTGAAACCTGTGAATCATGCTTTGCGTGTGCGTTGGTTGAATGAAGA
TGGCGAAGCGTCGCTGAGTAAAGAAGTGTTGCGCAGCCGTGCCGCCGAATATTGTGCCAATGAAATTGCCGCCATGTTGA
ACCGGGCGGCCGAGGGCGTATTGAACTTAAAAACGCGCCCTTTGCAATCCGGAGACATCGCCGTGTTGGTACGCACGCGC
GACGAGGGCAGCATGATCGGCGCGGCTCTCAAAGCGCGCGGCATACAGAGCGTGCTGCTGCAACGCCATTCCGTGTTTGC
CGAGAAAGAGGCGCGCGCGGTGGCGGCTTTGCTGGCTTTTTGGCTGCGTCCGCAGGAAACCGAGACGTTGCGTTTTGTGT
TGGGCAGCGTTTTATTCGGCCAAACGGCGGAGCAATTATATGCGCTGAACCAAAACGAGCATCAATTGCTGGATTACATA
AACGCCGCGCAAACCGCTTTGGCTACTTGGCAGAAACACGGCATTTATCCGGCGATGCAGCAGTTTGCCGCCCGTTATGA
TTTGGAAGGCGGCCTGCTGTCGGCGCGCAATGAGCGCAGCCTGACCAATTATCATCAGATTGTCGAGTTGTTGGCCGAAG
AAGACGAACGGAGCCGATCGCCCGAGTCGCTGCACCAATGGCTGAAAGCGCAAATCAGCGAAGCGCAAAACGGTAAAGAG
GCAGGTGAAAACAAAACTTTGCGGCTGGAAAGCGATGAGGCTTTGGTGAAAATCGTAACCATGCATGCGTCGAAGGGTTT
GCAATATCCGGTGGTGTTTTGCCCGTTTGTGTGGGATGCAGCGGATTATAAAACGGAAGATTGGCAGGTTATCAACCGTG
AAACGGGCAGCCAATTGGTGTCTGCGCTCGAGCTGATCGACGAAGACAAAAATGCTTTGGCTGATGAAGAATTGGGCGAG
CGGCTGCGCCTGCTTTATGTGGCGATGACGCGTGCCGAAGAGCAGCTTACCATTTATGCAGCTTACTTTAACGGCAGTGC
CAGAAACACGTTTTCTTATCTTTTGGCAGGCAGCGAAGAAGCAACGAGGGCAGAAATAGAAGCTGAGTATGCGGCAGAAA
AAAAGACCAACAAGGCGGAAGGAGAAAAAAAGATGCTGCTGCAAAATTGGCAGCGTTTGATACAAAATGCGCCTGAGGAT
ACCGATATTGCTTGGTTGCAGGGTGCGCCAGAAACTGCCGGAGTCCGCCCTCAAGCTTATTCTGAAAACAGGTTTCAAGC
TTGGACGCCGCCGGCGCGTGCGTTTGAACACATCCGGCATACCAGCTTTACCGGCTTGCTGCGCGATTTATCCGCCGCTG
CCGCACCGGAGCGCGAAGAGTTGCAACCTGCGGTAGATGCGGCAGAAGCAGGCTTGGCACAGAGCAATTTGGCAGAAAGC
CTGTCTGAAAACAGAATGGTGGGCGATGATGTTTACGATATCCACCATTTTCCGCGCGGAACCCATGCGGGCGTGTGTTT
GCATGAGCTTTTGGAGCATTTTGAATTTAACCGTCCGGCATCCGAGCAGCAGGCACAAATTGTAGAAACGCTGGCGCGCT
ACGGTTTTGGTGAAGAATGGCTGGATGCAGTATGCGGTATGCTGGATAAGGCGGCGCATGCCGAATTGTTTAACCGTTTG
GCCTTGGCGGATTTGCCCGCCCGAAACCGTTTGCCGGAAATGGATTTTATGCTCAAAGTGGAAGAGTTCAGCCCGGCCGG
GCTGAAAGCATGGTTTGCGCGCCCGAATCTCGCATTGCCGCCGGGCTGCATTGCCGTCGCGCAGCATTTGGATTTCGACA
CGGTAAAAGGGTTTCTCAGCGGTTTTATCGACATGACCTGTATCGACGGCGAAGGTAATGTCTGCGTGATTGACTATAAA
TCCAATTATCTCGGCGCAGGGCAGCAAGCCTATACGCAGGACGCGATGGATGAAGCGATGGCGGCGCACCATTATTATCT
GCAAGCCATGATTTATGCCGTGGCGGTTGCCCGCTATTTGCAGCAGCAAAATGCCGAGTTCAACACCATTTGCGTACGCT
ATTTATTTTTGCGCGGCTTGGGCAGTGAAGATGGCGGCGTATGGCGCTGGCAGCTCGATAAGGCGGATTTGCAGGAATGG
CTGTGA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(983-1189)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-442)

UvrD-like helicase C-terminal domain (UvrD_C)

(446-819)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

51.23

100

0.52