Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   H3L98_RS10050 Genome accession   NZ_CP059563
Coordinates   1968193..1970433 (-) Length   746 a.a.
NCBI ID   WP_027021909.1    Uniprot ID   A0AAE9HZN7
Organism   Conchiformibius steedae strain DSM 2580     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1963193..1975433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L98_RS10035 (H3L98_10040) tilS 1964333..1965637 (+) 1305 WP_051532037.1 tRNA lysidine(34) synthetase TilS -
  H3L98_RS10040 (H3L98_10045) - 1965691..1966692 (+) 1002 WP_338025823.1 hypothetical protein -
  H3L98_RS10045 (H3L98_10050) - 1966842..1968140 (+) 1299 WP_027021908.1 adenylosuccinate synthase -
  H3L98_RS10050 (H3L98_10055) comA 1968193..1970433 (-) 2241 WP_027021909.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H3L98_RS10055 (H3L98_10060) - 1970495..1971061 (-) 567 WP_027021910.1 DUF1877 family protein -
  H3L98_RS10060 (H3L98_10065) - 1971198..1971866 (+) 669 WP_156932252.1 hypothetical protein -
  H3L98_RS10065 (H3L98_10070) ubiD 1971893..1973371 (+) 1479 WP_027021912.1 4-hydroxy-3-polyprenylbenzoate decarboxylase -
  H3L98_RS10070 (H3L98_10075) - 1973460..1974863 (+) 1404 WP_027021913.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 82037.09 Da        Isoelectric Point: 9.9412

>NTDB_id=470663 H3L98_RS10050 WP_027021909.1 1968193..1970433(-) (comA) [Conchiformibius steedae strain DSM 2580]
MRYGLCVPAFCIGAAAAFFLPERGAWAWWATAWFAAAATAAGAYFWERQRLLAMALTLFCLITGAVYSLWRTETALQAQW
QVAQSPQSQLLDITVTGLPERSEDGRSRFTATARTEQGKEYRFLFYDYNKRDWHTGERWRIKARVRAPLGMRNPVGFDRE
AWALANGIDGLASVGRERERLGDAPVWNANGWRARISAAWQRTGKETAHGAGLMRALAVGDRSGLPPEAWAAFRPLGLNH
LVSISGLHISMVAVMAALLCKWLMRFLPRVPARPRVWQLGAGVAAAAFYTALAGFGIPALRSLLMLTVFAWAWLQRGVMT
AWQVWWTALAAVLLLQPAAVLAAGFWLSFGLVATLLWTLAARLPENKWRQAWRGQCAATLVGGIGAAYFFGTFPVFSLPV
NAVAIPLFSWILVPVALAASLSPFDFVRDLAAWLAQYTADVLLWLGARVPDWALAHAPAPLLMAALACALLLLLPRGGGW
RPLACCGVLMFTLYRPSAPKTDLNVYVWDVGQGLSVLLQTPSQNVLFDTGTPAAEMSLLPNLRALGIKQLDALVLSHHDD
DHDGGYPALAKAIHIKKLWAGQPEFYPKAHHCTNGTRWQSGRTVFEFLTPPPLPHAKDNEKSCVLRVIADGRAILITGDL
GVAGERTMVAQYGDALYSNVLVLGHHGSKTSTSDELLNAVEPEIAVASSGFANAFRHPHPDVLAKLQTRDIRVIRTDHNG
AFAFSFGGGEMREQRFPRQWWQRKPL

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=470663 H3L98_RS10050 WP_027021909.1 1968193..1970433(-) (comA) [Conchiformibius steedae strain DSM 2580]
ATGCGCTATGGTTTGTGTGTGCCTGCGTTCTGCATCGGTGCGGCGGCGGCATTTTTTTTGCCCGAACGCGGCGCGTGGGC
ATGGTGGGCAACAGCATGGTTTGCCGCAGCAGCAACGGCAGCAGGCGCGTATTTTTGGGAACGGCAGCGGCTGTTGGCAA
TGGCACTGACGCTGTTTTGCCTAATAACGGGCGCAGTGTATTCGCTGTGGCGCACCGAAACGGCATTGCAGGCACAATGG
CAGGTAGCGCAGTCGCCACAATCGCAATTATTGGACATCACGGTAACGGGTTTGCCCGAACGCAGCGAAGACGGTCGCAG
CCGTTTTACCGCCACGGCGCGTACCGAGCAAGGCAAAGAATACCGTTTCTTATTTTACGATTACAACAAACGCGATTGGC
ACACGGGCGAGCGTTGGCGCATTAAGGCAAGGGTACGCGCACCTTTGGGTATGCGTAATCCTGTGGGTTTTGACCGCGAG
GCGTGGGCGTTGGCAAACGGGATAGACGGTTTGGCTTCGGTGGGGCGCGAGCGGGAACGTTTGGGCGATGCGCCCGTGTG
GAATGCCAATGGCTGGCGGGCGCGGATTTCGGCGGCGTGGCAGCGCACGGGCAAAGAAACGGCACACGGCGCGGGACTGA
TGCGAGCGCTGGCGGTGGGCGACCGTTCGGGTTTGCCGCCTGAAGCATGGGCAGCGTTCCGACCTTTGGGTTTAAACCAT
TTGGTCAGTATTTCGGGTTTGCATATTTCTATGGTGGCGGTGATGGCGGCGCTGTTGTGCAAATGGCTGATGCGGTTTTT
ACCGCGTGTGCCTGCCCGTCCGAGAGTGTGGCAGTTGGGCGCAGGCGTGGCGGCAGCGGCGTTTTACACGGCATTGGCGG
GATTCGGCATTCCCGCTTTACGCAGCTTGCTGATGCTGACGGTGTTTGCATGGGCATGGCTGCAACGCGGCGTGATGACG
GCGTGGCAGGTGTGGTGGACAGCGTTGGCGGCGGTGCTGCTGTTACAACCTGCAGCGGTATTGGCGGCGGGATTTTGGTT
ATCTTTCGGTTTGGTGGCGACTTTATTGTGGACTTTGGCGGCGCGTTTGCCCGAAAACAAATGGCGACAGGCATGGCGCG
GACAATGCGCCGCCACTTTGGTGGGTGGCATTGGCGCAGCGTATTTTTTCGGCACGTTTCCCGTGTTCAGCTTGCCCGTG
AACGCCGTTGCGATTCCGCTGTTTTCGTGGATACTCGTGCCTGTGGCGTTGGCGGCTTCGCTGTCGCCGTTTGACTTTGT
GCGCGACCTTGCTGCCTGGCTGGCGCAATACACCGCAGACGTGCTGTTGTGGTTGGGGGCGCGTGTTCCCGATTGGGCGT
TGGCACACGCGCCCGCACCTTTGCTGATGGCAGCATTGGCGTGTGCTTTATTGCTGTTATTGCCACGCGGTGGCGGTTGG
CGACCTTTAGCGTGTTGCGGCGTGCTGATGTTTACCCTTTACCGTCCGTCTGCACCCAAAACCGATTTAAATGTTTATGT
TTGGGACGTGGGACAAGGTTTGTCGGTGCTGCTGCAAACCCCGTCACAAAACGTTTTGTTTGACACAGGCACGCCCGCTG
CCGAAATGTCGCTGCTGCCCAATTTACGCGCCTTGGGCATCAAACAATTAGACGCGCTGGTGTTGTCGCATCACGATGAC
GACCACGACGGCGGTTATCCCGCACTTGCCAAAGCCATTCACATCAAAAAACTATGGGCGGGACAACCCGAGTTTTACCC
CAAAGCACATCACTGCACCAATGGTACACGTTGGCAAAGCGGGCGCACCGTTTTTGAATTTCTCACCCCGCCGCCGCTAC
CCCATGCCAAAGACAATGAAAAAAGCTGCGTTTTGCGCGTGATTGCAGACGGGCGTGCCATTTTGATTACGGGCGATTTG
GGCGTGGCAGGCGAACGCACCATGGTTGCCCAATATGGCGATGCCCTGTATAGCAATGTGCTGGTGTTGGGACATCACGG
CAGCAAAACTTCTACTTCAGACGAACTGCTGAACGCTGTTGAACCCGAAATTGCCGTTGCCAGCAGCGGTTTTGCCAACG
CTTTCCGACACCCACACCCCGATGTGCTTGCCAAGCTGCAAACGCGTGATATTCGCGTGATTCGTACTGACCACAACGGC
GCGTTTGCTTTTTCTTTTGGCGGCGGCGAAATGCGCGAACAGCGTTTTCCGCGCCAATGGTGGCAACGTAAGCCATTGTA
A

Domains

Predicted by InterproScan.

Competence protein (Competence)

(217-474)

Domain of unknown function (DUF4131) (DUF4131)

(27-174)

Metallo-beta-lactamase superfamily (Lactamase_B)

(509-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

48.66

100

0.487