Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   H3L98_RS01360 Genome accession   NZ_CP059563
Coordinates   198243..201554 (+) Length   1103 a.a.
NCBI ID   WP_027021973.1    Uniprot ID   A0AAE9L0R8
Organism   Conchiformibius steedae strain DSM 2580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 193243..206554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L98_RS01360 (H3L98_01360) recC 198243..201554 (+) 3312 WP_027021973.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H3L98_RS01365 (H3L98_01365) - 201601..202389 (-) 789 WP_027021972.1 substrate-binding periplasmic protein -
  H3L98_RS01370 (H3L98_01370) - 202463..203416 (-) 954 WP_182078442.1 hypothetical protein -
  H3L98_RS01375 (H3L98_01375) - 203732..205618 (-) 1887 WP_027021970.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H3L98_RS01380 (H3L98_01380) - 205769..206431 (-) 663 WP_027021969.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 1103 a.a.        Molecular weight: 123147.58 Da        Isoelectric Point: 5.9423

>NTDB_id=470641 H3L98_RS01360 WP_027021973.1 198243..201554(+) (recC) [Conchiformibius steedae strain DSM 2580]
MLYLYQSNRLEYLAEMLCAVWGAQPLDDPFATEEVVVQSQGMRRFLSRFAARRLGVSANVRFSLPAGLAWRLMRQTLDNV
PEQSPFAPEVMRWRLLALFDSPQFAAADFSAVRAKLEPYLANGALAAYQLAGQLADVFDHYQVYRPQWIEAWRKGHTLPH
LHEDQLWQARLWQSLDDGTQTHRVVLWQQLLQQLGNAPLPQRMTVFGIATLAPMYLQLLLHLAQHCDIHIYALNPSMLYW
GDVVEAQTILQQAGEPDLSRQGHPLLASLGKQGRDFFDALTQAQISAERDVFDETPASPSLLHTLQYHIQNQILPAEASN
TWLSEHRDWLAQQNLAADTPLAQLCADTSIQIHSAHSPLRELHILKDRLLTLLHTHPDWQPHDIAVLTPDIAPYAPFIEA
VFGGSADGIALPYSVSDVRLSRRQPLLYALEQALSLLAGRFEAEKLLPLLDNETVQRRFGITLDDLPLLHDTVAQLNIRW
GADAEQRAEHGGQYNLFTWQQGLERLILGWVMPENGALWHGVSPWHAAPEQSAVLARFAALVRVLADTRRQWQTAATPAQ
WAQRLRDLCQALCLADDGDADALSQWEQALADWTTHADSAGFEQAIGSDTAVAHVRRFLGSQSDAGFLRGGMTFCSMVPM
RSLPFKAVCLLGLNDGQFPRNTSASPFDLIAKHPEKGDRARRDDDRYLFLEAILSAREVLYLSYVGRSVRSNDALAPSVL
LYELADSVAALSGVPANELMDKWVLQHPLQGFSPRYFDGTPRLHGSRSDYAAALNQIPTTAAPFLPDVPDDTPAVAPAAP
VPQSRFLHFWRNPPRSYLKQHLDWQAPHSGEEWVSSEPFMPEQPHLLDQAYLHAREHGLPFDELADELGAQSLLPAGRLG
TLAQHDFAARAAALDGEILRSPRLPEQNGVLNGAAGALAYRLPHCRQHGQIIAAADFVRSRQAKPSAADQIELLLTHLIY
CAVLPDSLPEAQRHTHCISLFASITLPPLPQAQAQDALQQWLAAYHAGQHAPLPFFPRMSLRAAVKFYTDGQDWEKAQAK
AAEVYHGGFHGFAQADYPEIKLLYGRDPEAEPPYRLPAFRRLVENLFAPFGECLSALNSEDEK

Nucleotide


Download         Length: 3312 bp        

>NTDB_id=470641 H3L98_RS01360 WP_027021973.1 198243..201554(+) (recC) [Conchiformibius steedae strain DSM 2580]
ATGCTGTATCTGTATCAGTCCAACCGTTTGGAATATTTGGCGGAAATGCTGTGCGCTGTATGGGGGGCGCAGCCTTTGGA
CGACCCTTTTGCCACCGAAGAAGTGGTGGTACAGAGCCAAGGCATGCGGCGATTTTTGTCGCGTTTTGCGGCGCGGCGGC
TGGGCGTGTCTGCCAATGTGCGTTTCAGCCTGCCTGCGGGTTTGGCGTGGCGGCTGATGCGGCAGACTTTGGACAATGTT
CCCGAACAAAGCCCGTTTGCGCCTGAAGTAATGCGTTGGCGTTTGTTGGCATTGTTTGATTCGCCACAGTTTGCCGCTGC
TGATTTCTCTGCCGTGCGCGCCAAACTTGAACCCTATCTTGCCAACGGCGCACTGGCAGCCTACCAATTGGCAGGACAAC
TTGCCGACGTGTTTGACCATTATCAGGTGTACCGCCCGCAATGGATTGAAGCATGGCGCAAAGGGCATACCCTGCCCCAT
CTGCACGAAGACCAATTATGGCAGGCGCGTTTGTGGCAAAGTTTGGACGATGGCACGCAAACCCACCGTGTGGTTTTATG
GCAACAATTGTTGCAACAATTGGGTAACGCCCCCTTACCGCAACGCATGACCGTTTTCGGCATTGCCACGCTTGCGCCCA
TGTATTTGCAACTGCTGCTGCATTTGGCACAACACTGCGATATCCACATTTACGCGCTCAACCCCAGCATGCTGTATTGG
GGCGATGTAGTGGAAGCACAAACCATTTTGCAACAGGCAGGCGAACCCGATTTAAGCCGTCAGGGACACCCTTTACTGGC
ATCTTTAGGCAAACAGGGACGCGATTTTTTTGACGCACTCACACAGGCACAAATTTCAGCAGAACGCGATGTGTTTGACG
AAACGCCTGCCTCGCCCTCACTGCTGCACACCCTGCAATACCATATTCAAAACCAAATCTTACCCGCCGAAGCCTCAAAT
ACTTGGTTAAGCGAACACCGCGACTGGCTGGCACAGCAAAACCTCGCCGCCGATACGCCCTTGGCGCAGTTGTGCGCCGA
CACCAGCATTCAGATTCACAGTGCCCACAGTCCCCTGCGCGAACTGCATATTTTAAAAGACCGTTTACTAACCTTGTTGC
ACACGCACCCCGATTGGCAACCGCACGACATCGCTGTACTCACGCCCGATATTGCGCCGTATGCGCCGTTTATTGAAGCC
GTATTCGGCGGCAGCGCAGACGGTATTGCCTTGCCCTATTCGGTATCAGACGTGCGCCTGTCGCGGCGGCAACCGCTGCT
GTATGCCTTGGAACAGGCTTTGTCGCTGCTGGCAGGACGTTTTGAAGCGGAAAAACTGCTGCCGCTGCTGGACAACGAAA
CCGTCCAACGCCGTTTCGGTATCACTTTGGACGATTTACCGCTGCTGCACGACACGGTGGCACAACTGAATATCCGCTGG
GGCGCAGATGCGGAACAACGCGCCGAACACGGCGGACAATACAATCTGTTTACTTGGCAGCAGGGTTTGGAACGCTTGAT
ATTGGGTTGGGTCATGCCTGAAAACGGCGCATTATGGCATGGGGTTAGCCCTTGGCACGCCGCGCCCGAACAAAGCGCGG
TACTGGCGCGTTTTGCCGCTTTGGTGCGCGTGTTGGCAGACACCCGCAGGCAATGGCAAACCGCCGCCACGCCCGCACAA
TGGGCGCAACGGCTGCGCGATTTGTGTCAGGCACTGTGTTTGGCAGACGATGGCGATGCCGATGCGCTGTCGCAATGGGA
ACAGGCGTTGGCGGATTGGACGACACACGCCGACAGCGCGGGTTTTGAACAGGCAATCGGCAGCGACACCGCCGTTGCCC
ATGTGCGCCGTTTTCTCGGCAGCCAAAGCGATGCGGGCTTTTTGCGCGGCGGGATGACATTTTGCAGCATGGTGCCCATG
CGTTCGCTGCCGTTTAAAGCCGTGTGTCTGCTGGGTTTGAATGACGGGCAGTTTCCGCGCAACACCTCTGCTTCGCCTTT
TGATTTGATTGCCAAACACCCCGAAAAAGGCGACCGCGCCCGCCGTGATGACGACCGTTATCTGTTTTTGGAAGCCATAC
TCAGCGCGCGTGAAGTGCTGTATTTGTCGTATGTGGGCAGAAGCGTCCGCAGCAATGACGCGCTTGCGCCCTCGGTGCTG
TTATACGAATTGGCAGACAGCGTGGCGGCGTTGTCGGGCGTGCCTGCAAACGAATTGATGGACAAATGGGTGTTGCAACA
CCCGCTACAAGGCTTTTCGCCGCGCTATTTTGACGGTACGCCGCGTTTGCACGGCAGCCGCAGCGATTACGCCGCCGCTT
TAAACCAAATCCCCACCACCGCTGCACCGTTTCTGCCCGATGTGCCTGACGACACCCCCGCCGTTGCCCCTGCCGCGCCC
GTACCGCAAAGCCGTTTTTTACACTTTTGGCGCAACCCGCCGCGCAGTTATTTAAAACAGCATTTGGATTGGCAAGCCCC
GCACAGCGGCGAAGAATGGGTCAGCAGCGAACCGTTTATGCCCGAACAGCCCCATCTGCTTGACCAAGCCTATTTACACG
CCCGCGAACACGGTTTGCCGTTTGATGAGCTGGCAGACGAATTGGGCGCACAAAGCCTGTTGCCCGCAGGACGTTTGGGG
ACATTGGCACAACACGATTTTGCTGCCCGTGCCGCTGCTTTAGACGGCGAAATTTTACGCAGTCCGCGCCTGCCCGAACA
AAACGGCGTATTAAACGGCGCAGCCGGTGCGCTTGCCTACCGCTTGCCGCACTGCCGCCAACACGGACAAATCATCGCCG
CTGCCGATTTTGTCCGTTCGCGCCAAGCCAAACCCTCTGCTGCCGACCAAATTGAACTGCTGCTTACCCATTTGATTTAC
TGCGCCGTTTTGCCCGACAGCCTGCCCGAAGCGCAACGCCACACCCATTGCATCAGCCTGTTTGCTTCCATTACTTTGCC
GCCGCTGCCGCAAGCGCAGGCACAAGATGCCCTACAACAATGGCTTGCCGCCTACCACGCAGGACAACATGCCCCGCTGC
CGTTTTTTCCGCGCATGAGCTTACGCGCCGCCGTCAAGTTTTATACAGACGGGCAAGACTGGGAAAAAGCCCAAGCCAAA
GCCGCAGAAGTCTATCACGGCGGTTTTCACGGCTTTGCCCAAGCCGATTATCCCGAAATCAAACTGCTGTACGGGCGCGA
CCCCGAAGCCGAACCGCCCTACCGTTTGCCCGCCTTCCGCCGTTTGGTGGAAAACCTGTTTGCCCCGTTTGGCGAATGTC
TGTCTGCATTAAACAGCGAAGACGAAAAATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(800-1024)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

50.182

99.547

0.5