Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H2677_RS14300 Genome accession   NZ_CP059558
Coordinates   3089411..3089737 (-) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain YR7     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084411..3094737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS14280 (H2677_14275) - 3084667..3085278 (-) 612 WP_099949312.1 FHA domain-containing protein -
  H2677_RS14285 (H2677_14280) gspD 3085342..3087597 (-) 2256 WP_004957392.1 type II secretion system secretin GspD -
  H2677_RS14290 (H2677_14285) - 3087639..3088487 (-) 849 WP_212638801.1 type II secretion system protein N -
  H2677_RS14295 (H2677_14290) gspN 3088487..3089230 (-) 744 WP_035336641.1 type II secretion system protein N -
  H2677_RS14300 (H2677_14295) hns 3089411..3089737 (-) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  H2677_RS14305 (H2677_14300) - 3090120..3090551 (-) 432 WP_212638802.1 thioesterase family protein -
  H2677_RS14310 (H2677_14305) - 3090560..3091753 (-) 1194 WP_004957381.1 hypothetical protein -
  H2677_RS14315 (H2677_14310) - 3091760..3092590 (-) 831 WP_212638803.1 hypothetical protein -
  H2677_RS14320 (H2677_14315) - 3092587..3093363 (-) 777 WP_212638804.1 uroporphyrinogen-III synthase -
  H2677_RS14325 (H2677_14320) hemC 3093365..3094282 (-) 918 WP_099949318.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=470605 H2677_RS14300 WP_004958548.1 3089411..3089737(-) (hns) [Acinetobacter junii strain YR7]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470605 H2677_RS14300 WP_004958548.1 3089411..3089737(-) (hns) [Acinetobacter junii strain YR7]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGTGTGGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCTCGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907