Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H2677_RS13805 Genome accession   NZ_CP059558
Coordinates   2975256..2977481 (+) Length   741 a.a.
NCBI ID   WP_194598287.1    Uniprot ID   A0A8I0VAN4
Organism   Acinetobacter junii strain YR7     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2970256..2982481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS13780 (H2677_13775) - 2970331..2971170 (+) 840 WP_004916742.1 HlyC/CorC family transporter -
  H2677_RS13785 (H2677_13780) lnt 2971167..2972726 (+) 1560 WP_212638768.1 apolipoprotein N-acyltransferase -
  H2677_RS13790 (H2677_13785) - 2972781..2973125 (-) 345 WP_126131677.1 hypothetical protein -
  H2677_RS13795 (H2677_13790) gspG 2973389..2973826 (-) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  H2677_RS13800 (H2677_13795) gspF 2973850..2975055 (-) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  H2677_RS13805 (H2677_13800) priA 2975256..2977481 (+) 2226 WP_194598287.1 primosomal protein N' Machinery gene
  H2677_RS13810 (H2677_13805) - 2977516..2979336 (+) 1821 WP_212638769.1 cation:proton antiporter -
  H2677_RS13815 (H2677_13810) hslO 2979456..2980331 (+) 876 WP_004957557.1 Hsp33 family molecular chaperone HslO -
  H2677_RS13820 (H2677_13815) - 2980664..2981608 (+) 945 WP_125298835.1 DnaJ C-terminal domain-containing protein -
  H2677_RS13825 (H2677_13820) - 2981620..2981946 (+) 327 WP_039047671.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84101.91 Da        Isoelectric Point: 8.4025

>NTDB_id=470601 H2677_RS13805 WP_194598287.1 2975256..2977481(+) (priA) [Acinetobacter junii strain YR7]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILTHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLIECQLEAHDFTPMPIQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQSLRAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=470601 H2677_RS13805 WP_194598287.1 2975256..2977481(+) (priA) [Acinetobacter junii strain YR7]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACTTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACTGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGTCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTCACGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGT
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAAGCATTGGAAAAAAAGGGACTGATTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTATACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATTCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGTGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTCCTAAAGCAAGGTAAACAAGTTTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACGGTCGCACGCTTCAAATCTCGTTTTCATTGCGATGTTGCTTTACTGCACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATCTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTTGCCCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCAGCTACACCAAGTATTGATAGTTATC
ATTTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATTAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTCCTAAACCGTCGAGGTTACGCTCCTGTTTTGCTATGTGAAAGTTGTGGGTGGCAAGCAAATT
GCCCACATTGTGATGCACATTTTACTGTACATTCGCAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGATGAATGCCCTGCTTGTAAACATCAAACGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTGATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATTTTGTTAGGCACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATCGACTCAGGATTATTAAGCGTAGACCCTAGAGCACCTGAGCGCACAGCACAATT
GATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTGTATTTACAAAGTTTAAGACCTGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCCGTTGCAAAACAGATGCTGAGTGAACGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTAGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTGATGGAAGCAGC
ACAAAGCTTAAGAGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.326

99.73

0.811