Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H2677_RS13275 Genome accession   NZ_CP059558
Coordinates   2874172..2875059 (-) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869172..2880059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS13255 (H2677_13250) - 2869540..2870613 (+) 1074 WP_004916462.1 PhoH family protein -
  H2677_RS13260 (H2677_13255) ybeY 2870906..2871391 (+) 486 WP_212638725.1 rRNA maturation RNase YbeY -
  H2677_RS13265 (H2677_13260) - 2871403..2871702 (+) 300 WP_212638726.1 antibiotic biosynthesis monooxygenase -
  H2677_RS13270 (H2677_13265) - 2871767..2873917 (-) 2151 WP_212638727.1 TonB-dependent siderophore receptor -
  H2677_RS13275 (H2677_13270) tonB2 2874172..2875059 (-) 888 WP_004957789.1 energy transducer TonB Machinery gene
  H2677_RS13280 (H2677_13275) - 2875304..2875981 (+) 678 WP_212638728.1 hypothetical protein -
  H2677_RS13285 (H2677_13280) - 2876175..2876891 (+) 717 WP_004916473.1 DUF3108 domain-containing protein -
  H2677_RS13290 (H2677_13285) - 2876980..2877555 (+) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  H2677_RS13295 (H2677_13290) thyA 2877714..2878556 (+) 843 WP_004957784.1 thymidylate synthase -
  H2677_RS13300 (H2677_13295) - 2878577..2879086 (+) 510 WP_004957782.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=470600 H2677_RS13275 WP_004957789.1 2874172..2875059(-) (tonB2) [Acinetobacter junii strain YR7]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=470600 H2677_RS13275 WP_004957789.1 2874172..2875059(-) (tonB2) [Acinetobacter junii strain YR7]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACCGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCCGATCAAAAGGGTTCTGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAAGCTGATGCGACTACAGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGAGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCGATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAGCGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATTTAGATAAATTCCGCCAAAAAGTTGAGCTCTACGGAAATCGCTATTATCCAGATGCTG
CTAAACAACAGCGGTTATCGGGCGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGGCATTCTATTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGTGCTCCTTTTGGTGCATTTGA
TTCCACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGTACTTGGCGTTTTGATCCAGTGGATGCTGAGTTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769