Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H2788_RS17445 Genome accession   NZ_CP059550
Coordinates   3659272..3659598 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain E-022166     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654272..3664598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS17425 (H2788_17320) - 3654377..3655003 (-) 627 WP_077165227.1 FHA domain-containing protein -
  H2788_RS17430 (H2788_17325) gspD 3655044..3657320 (-) 2277 WP_347016667.1 type II secretion system secretin GspD -
  H2788_RS17435 (H2788_17330) - 3657362..3658198 (-) 837 WP_347016668.1 type II secretion system protein N -
  H2788_RS17440 (H2788_17335) gspN 3658198..3658941 (-) 744 WP_347016669.1 type II secretion system protein N -
  H2788_RS17445 (H2788_17340) hns 3659272..3659598 (-) 327 WP_002053185.1 H-NS histone family protein Regulator
  H2788_RS17450 (H2788_17345) - 3659792..3660232 (-) 441 WP_347016670.1 thioesterase family protein -
  H2788_RS17455 (H2788_17350) - 3660240..3661433 (-) 1194 WP_347016671.1 heme biosynthesis protein HemY -
  H2788_RS17460 (H2788_17355) - 3661443..3662282 (-) 840 WP_347016672.1 hypothetical protein -
  H2788_RS17465 (H2788_17360) - 3662291..3663058 (-) 768 WP_347016673.1 uroporphyrinogen-III synthase -
  H2788_RS17470 (H2788_17365) hemC 3663063..3663980 (-) 918 WP_347016674.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=470553 H2788_RS17445 WP_002053185.1 3659272..3659598(-) (hns) [Acinetobacter seifertii strain E-022166]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470553 H2788_RS17445 WP_002053185.1 3659272..3659598(-) (hns) [Acinetobacter seifertii strain E-022166]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991