Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H2788_RS16940 Genome accession   NZ_CP059550
Coordinates   3547213..3549441 (+) Length   742 a.a.
NCBI ID   WP_151749804.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3542213..3554441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS16915 (H2788_16820) - 3543751..3544089 (-) 339 WP_000434938.1 tRNA-binding protein -
  H2788_RS16920 (H2788_16825) - 3544321..3544581 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  H2788_RS16925 (H2788_16830) - 3544641..3544985 (-) 345 WP_019456903.1 hypothetical protein -
  H2788_RS16930 (H2788_16835) gspG 3545251..3545835 (-) 585 WP_347016634.1 type II secretion system major pseudopilin GspG -
  H2788_RS16935 (H2788_16840) gspF 3545859..3547064 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  H2788_RS16940 (H2788_16845) priA 3547213..3549441 (+) 2229 WP_151749804.1 primosomal protein N' Machinery gene
  H2788_RS16945 (H2788_16850) - 3549517..3551358 (+) 1842 WP_174722638.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H2788_RS16950 (H2788_16855) - 3551524..3552399 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  H2788_RS16955 (H2788_16860) - 3552537..3553148 (+) 612 WP_004699012.1 LysE family translocator -
  H2788_RS16960 (H2788_16865) - 3553298..3554260 (+) 963 WP_347016635.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84011.86 Da        Isoelectric Point: 8.5625

>NTDB_id=470549 H2788_RS16940 WP_151749804.1 3547213..3549441(+) (priA) [Acinetobacter seifertii strain E-022166]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=470549 H2788_RS16940 WP_151749804.1 3547213..3549441(+) (priA) [Acinetobacter seifertii strain E-022166]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTAA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATTTATGGAAAATCATTC
CTTGTGACAATGTAGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCGTATCAGATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACTGCGACACTTAAAGCGTTACAAAAGAAAGGGCTCATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACGCTAAATGATGATCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCACTCTGGCTTAAATGACTCTA
AACGATTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGGACTCGTTCCGCCATTTATACGCCG
CTGCCACGTCTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAGCAGCAAGAAGGCTTCCGTTATCATGC
GCGTGATGTCGCACTGTACCGAGGCCACTTACAAAACTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGCATCGACAGTT
ATCACTTGGTAGAAACTGGTAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAATCGTCGTGGCTATGCGCCTGTACTTGTGTGTGAAAGCTGTGGATGGCAAGCGA
ATTGTCCACATTGCGATGCGCATTTTACGTTACACACTCAGCCTTATTCTTATTTGCATTGTCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACGTTAGGTGCAGGAACAGCCAAAGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGTGTTGACCGTGACAGCACAAGTCGTGTCGGTAGTTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTGAGTGTCGATATTCGGGCGCCAGAACGTACTGCGCA
GCTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAGGATTATCGAGCGGTCGCGAAACAAACATTAGCTGAACGGAAAGTTGCATTA
CTACCGCCTTATCGTTATGCGGTCTTAATTCGTGCCGAGTCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCTGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGACCCATTCCAGCACCAATGGAACGTAAAGCTG
GACGTTACCGCGCCCATATGGTGATTTTATCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCAGGCTCTCTATTGATGTTGATCCACAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.305

100

0.973