Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H2788_RS02510 Genome accession   NZ_CP059550
Coordinates   515912..516796 (+) Length   294 a.a.
NCBI ID   WP_347016944.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510912..521796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS02485 (H2788_02485) - 511308..512555 (-) 1248 WP_347016943.1 YihY family inner membrane protein -
  H2788_RS02490 (H2788_02490) wrbA 512843..513436 (+) 594 WP_347017479.1 NAD(P)H:quinone oxidoreductase -
  H2788_RS02495 (H2788_02495) - 513490..514065 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  H2788_RS02500 (H2788_02500) - 514137..514850 (-) 714 WP_100193379.1 DUF3108 domain-containing protein -
  H2788_RS02505 (H2788_02505) - 515008..515679 (-) 672 WP_004705429.1 hypothetical protein -
  H2788_RS02510 (H2788_02510) tonB2 515912..516796 (+) 885 WP_347016944.1 TonB family protein Machinery gene
  H2788_RS02515 (H2788_02515) ybeY 516872..517363 (-) 492 WP_200027142.1 rRNA maturation RNase YbeY -
  H2788_RS02520 (H2788_02520) - 517640..518728 (-) 1089 WP_004705435.1 PhoH family protein -
  H2788_RS02525 (H2788_02525) miaB 518766..520217 (-) 1452 WP_019456556.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33534.37 Da        Isoelectric Point: 7.5188

>NTDB_id=470530 H2788_RS02510 WP_347016944.1 515912..516796(+) (tonB2) [Acinetobacter seifertii strain E-022166]
MLKKRSLPIEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGT
FREAHRMSSNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAILL
LESSGHSVLDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=470530 H2788_RS02510 WP_347016944.1 515912..516796(+) (tonB2) [Acinetobacter seifertii strain E-022166]
ATGTTGAAAAAAAGAAGTCTTCCTATAGAGCCTTTTCTTTATTGGTGGCAAGACAGAGTCTTTATTGTTGCAATAATACT
CGCAATCTTGTTGCATACTCTTGTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCG
CTATATCTATTCGTCCTGCTGAGGATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACT
TTTAGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACAACTGATGCTTCGACGGGAGAAGCCCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAAAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAACAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCTTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGCCGTGGTGCGCCATTTGGTCGTTTTGA
TAGCAATATGAAAGATATTTCTGAGCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946