Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H2788_RS01770 Genome accession   NZ_CP059550
Coordinates   375293..375766 (+) Length   157 a.a.
NCBI ID   WP_347016898.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370293..380766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS01745 (H2788_01745) - 370758..372863 (-) 2106 WP_004705224.1 HD domain-containing protein -
  H2788_RS01750 (H2788_01750) - 372903..373033 (-) 131 Protein_336 hypothetical protein -
  H2788_RS01755 (H2788_01755) rpoZ 373072..373350 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H2788_RS01760 (H2788_01760) gmk 373423..374052 (-) 630 WP_039250522.1 guanylate kinase -
  H2788_RS01765 (H2788_01765) ispH 374175..375125 (+) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H2788_RS01770 (H2788_01770) fimU 375293..375766 (+) 474 WP_347016898.1 GspH/FimT family pseudopilin Machinery gene
  H2788_RS01775 (H2788_01775) pilV 375766..376269 (+) 504 WP_347016899.1 type IV pilus modification protein PilV -
  H2788_RS01780 (H2788_01780) - 376269..377243 (+) 975 WP_151682768.1 PilW family protein -
  H2788_RS01785 (H2788_01785) - 377246..378010 (+) 765 WP_347016900.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17100.72 Da        Isoelectric Point: 6.7065

>NTDB_id=470527 H2788_RS01770 WP_347016898.1 375293..375766(+) (fimU) [Acinetobacter seifertii strain E-022166]
MRGIIPQEGFTLIELMVTIAVMAVIAVMAVPSMSNILEAKHFDDNQNNLMQTINLARSQAVLNRTNVSVNLNSNAANTST
NFNWIADQHNSLELRLLAADGTTTLLSMQNITFIANGTVSGISQDLLVSMCNSQLHIKKSFVLSKLGSTFMNPKESC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=470527 H2788_RS01770 WP_347016898.1 375293..375766(+) (fimU) [Acinetobacter seifertii strain E-022166]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTAATTGAGCTCATGGTAACCATCGCAGTGATGGCAGTTATTGCTGT
GATGGCTGTGCCGTCTATGTCAAATATACTGGAAGCAAAGCATTTTGATGATAATCAAAATAACTTGATGCAAACGATTA
ATCTGGCAAGAAGCCAAGCTGTACTAAATCGTACAAATGTTTCTGTAAATTTAAACTCAAATGCTGCTAATACCTCAACA
AATTTTAACTGGATTGCAGACCAGCATAATAGTCTTGAGTTAAGACTTTTGGCAGCAGATGGAACAACAACTCTTCTATC
CATGCAAAATATCACATTTATAGCAAATGGAACCGTTTCTGGTATTTCTCAAGATTTGCTTGTTTCTATGTGTAATTCTC
AACTACATATTAAGAAAAGTTTTGTTTTATCAAAATTGGGTTCTACCTTCATGAATCCAAAGGAAAGTTGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

57.325

100

0.573