Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPPN120_RS06475 Genome accession   NC_017378
Coordinates   1350030..1351343 (-) Length   437 a.a.
NCBI ID   WP_000653613.1    Uniprot ID   -
Organism   Helicobacter pylori Puno120     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345030..1356343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN120_RS06445 (HPPN120_06665) nadC 1345493..1346314 (-) 822 WP_000404039.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPPN120_RS06450 (HPPN120_06670) nadA 1346314..1347324 (-) 1011 WP_001141814.1 quinolinate synthase NadA -
  HPPN120_RS06455 (HPPN120_06675) - 1347314..1348117 (-) 804 WP_000226195.1 phosphatidylserine decarboxylase -
  HPPN120_RS06460 (HPPN120_06680) - 1348111..1348617 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  HPPN120_RS06465 (HPPN120_06685) - 1348630..1349124 (-) 495 WP_014536987.1 hypothetical protein -
  HPPN120_RS06470 (HPPN120_06690) mqnP 1349117..1350001 (-) 885 WP_000913981.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPPN120_RS06475 (HPPN120_06695) comEC/comE3 1350030..1351343 (-) 1314 WP_000653613.1 ComEC/Rec2 family competence protein Machinery gene
  HPPN120_RS06480 (HPPN120_06700) - 1351340..1352800 (-) 1461 WP_000349781.1 replicative DNA helicase -
  HPPN120_RS06485 (HPPN120_06705) - 1352811..1354205 (-) 1395 WP_000954080.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPPN120_RS06490 (HPPN120_06710) crdS 1354208..1355410 (-) 1203 WP_080004537.1 copper-sensing histidine kinase CrdS -
  HPPN120_RS06495 (HPPN120_06715) crdR 1355376..1356017 (-) 642 WP_001169819.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50190.20 Da        Isoelectric Point: 9.8368

>NTDB_id=47051 HPPN120_RS06475 WP_000653613.1 1350030..1351343(-) (comEC/comE3) [Helicobacter pylori Puno120]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=47051 HPPN120_RS06475 WP_000653613.1 1350030..1351343(-) (comEC/comE3) [Helicobacter pylori Puno120]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTAAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGT
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment