Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H2789_RS02310 Genome accession   NZ_CP059549
Coordinates   469557..470441 (+) Length   294 a.a.
NCBI ID   WP_347019462.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464557..475441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS02285 (H2789_02280) - 464870..466117 (-) 1248 WP_347019461.1 YihY family inner membrane protein -
  H2789_RS02290 (H2789_02285) wrbA 466478..467086 (+) 609 WP_004639482.1 NAD(P)H:quinone oxidoreductase -
  H2789_RS02295 (H2789_02290) - 467134..467709 (-) 576 WP_004639480.1 xanthine phosphoribosyltransferase -
  H2789_RS02300 (H2789_02295) - 467781..468494 (-) 714 WP_199989508.1 DUF3108 domain-containing protein -
  H2789_RS02305 (H2789_02300) - 468653..469324 (-) 672 WP_080027817.1 hypothetical protein -
  H2789_RS02310 (H2789_02305) tonB2 469557..470441 (+) 885 WP_347019462.1 TonB family protein Machinery gene
  H2789_RS02315 (H2789_02310) ybeY 470543..471025 (-) 483 WP_347019463.1 rRNA maturation RNase YbeY -
  H2789_RS02320 (H2789_02315) - 471035..472123 (-) 1089 WP_017388325.1 PhoH family protein -
  H2789_RS02325 (H2789_02320) miaB 472161..473612 (-) 1452 WP_133747487.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33578.16 Da        Isoelectric Point: 9.1535

>NTDB_id=470490 H2789_RS02310 WP_347019462.1 469557..470441(+) (tonB2) [Acinetobacter calcoaceticus strain NCIMB13260]
MLNKRSLLIEPFYHWWQDRVFIVATILAVLLHIFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FREAHRTSSDTPNPMSNDASTGDAQLETLQKVQQQRQLKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=470490 H2789_RS02310 WP_347019462.1 469557..470441(+) (tonB2) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGTTGAACAAAAGAAGTCTATTGATAGAGCCTTTTTATCATTGGTGGCAAGACCGAGTCTTTATTGTTGCGACAATATT
GGCAGTCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCGATGCCTAGTCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTGCAGCAGGCAGACTTTTTGGCGCAAGCAGACCAGCAAGGTTCAGGCGCA
TTTCGTGAAGCTCACCGTACCTCTAGTGATACTCCAAATCCCATGTCTAATGATGCTTCAACTGGAGATGCGCAGTTAGA
AACTTTGCAAAAGGTTCAGCAACAAAGACAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGACGCCAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCGAGC
CTTGAAGCACAATATTTACAACGCCAACAGGATTTTAGCCGCCAGCAAAAAATAAAAACAGTAGATGGAATTCAGGCAAA
AAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTGGAGTTGTATGGTAATCGCTATTACCCAGAAGAAG
CCAAACTGCAACAGTTAAAAGGCGAAGTCCGTTTAATGGTTATTTTAAATGCACAAGGAGGGATTCGTGCAATTCGGTTG
CTTGAGAGTTCAGGGCATTCGGTATTAGATGAAGCTGCAAAGTCTTCAGTACGTCGCGGCGCACCATTTGGGCATTTTGA
TACCAATATGAAAGACATTTCTGAATTGCGTATTGTACGTACTTGGCGTTTCGATCCCGCTCAAGCAGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884