Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H2789_RS01605 Genome accession   NZ_CP059549
Coordinates   340232..340681 (+) Length   149 a.a.
NCBI ID   WP_311085676.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335232..345681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS01590 (H2789_01595) - 335281..336027 (+) 747 WP_347019414.1 PilX N-terminal domain-containing pilus assembly protein -
  H2789_RS01595 (H2789_01600) - 336052..339738 (+) 3687 WP_347019415.1 PilC/PilY family type IV pilus protein -
  H2789_RS01600 (H2789_01605) comE 339748..340248 (+) 501 WP_347019416.1 type IV pilin protein Machinery gene
  H2789_RS01605 (H2789_01610) comF 340232..340681 (+) 450 WP_311085676.1 type IV pilin protein Machinery gene
  H2789_RS01610 (H2789_01615) rpsP 340828..341079 (+) 252 WP_016140011.1 30S ribosomal protein S16 -
  H2789_RS01615 (H2789_01620) rimM 341101..341649 (+) 549 WP_003653772.1 ribosome maturation factor RimM -
  H2789_RS01620 (H2789_01625) trmD 341692..342447 (+) 756 WP_005038328.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H2789_RS01625 (H2789_01630) rplS 342667..343035 (+) 369 WP_003653770.1 50S ribosomal protein L19 -
  H2789_RS01630 (H2789_01635) - 343089..344030 (-) 942 WP_347020191.1 triacylglycerol lipase -
  H2789_RS01635 (H2789_01640) - 344148..345179 (-) 1032 WP_347019417.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16566.79 Da        Isoelectric Point: 8.9344

>NTDB_id=470487 H2789_RS01605 WP_311085676.1 340232..340681(+) (comF) [Acinetobacter calcoaceticus strain NCIMB13260]
MLKNGRHQGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRTDVQAEMLRINQRLQSYKVVNHSFNNATLDNGTALQSY
PLTGTAFYTVTLAIDADNQGYLLKATPIIASIQNGNGEVCVNQDQQRYWFKGGICSSANLSNTSNWDGR

Nucleotide


Download         Length: 450 bp        

>NTDB_id=470487 H2789_RS01605 WP_311085676.1 340232..340681(+) (comF) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGCTGAAAAATGGTAGACATCAAGGATTTACCTTAATTGAGCTGATGATTGTGGTGGCGATCATTGCAATTTTGGCAGC
AATTGCTTATCCGTCTTATACCCAATATAAAATTCGTACTAACCGTACTGATGTACAAGCTGAGATGCTGCGTATTAATC
AACGATTACAAAGCTATAAAGTGGTTAATCATAGTTTTAATAATGCTACTTTAGATAATGGTACAGCATTACAAAGTTAT
CCCTTAACAGGAACTGCTTTTTATACTGTAACTTTAGCCATTGATGCTGATAATCAGGGATATTTACTCAAAGCTACTCC
AATTATTGCTTCTATACAAAATGGTAATGGTGAGGTCTGCGTAAATCAGGATCAACAGCGCTATTGGTTTAAAGGTGGAA
TCTGCTCATCAGCAAACTTGTCAAATACTTCAAATTGGGATGGACGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

63.194

96.644

0.611
  pilE Acinetobacter baumannii D1279779

47.482

93.289

0.443