Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H2789_RS01575 Genome accession   NZ_CP059549
Coordinates   333287..333733 (+) Length   148 a.a.
NCBI ID   WP_347019411.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328287..338733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS01545 (H2789_01550) - 328747..330852 (-) 2106 WP_005038306.1 HD domain-containing protein -
  H2789_RS01550 (H2789_01555) - 330893..330996 (-) 104 Protein_296 hypothetical protein -
  H2789_RS01555 (H2789_01560) rpoZ 331062..331340 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  H2789_RS01560 (H2789_01565) gmk 331413..332042 (-) 630 WP_003653783.1 guanylate kinase -
  H2789_RS01565 (H2789_01570) ispH 332165..333115 (+) 951 WP_003653781.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H2789_RS01570 (H2789_01575) - 333081..333381 (-) 301 Protein_300 hypothetical protein -
  H2789_RS01575 (H2789_01580) fimU 333287..333733 (+) 447 WP_347019411.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H2789_RS01580 (H2789_01585) pilV 333730..334251 (+) 522 WP_347019412.1 type IV pilus modification protein PilV -
  H2789_RS01585 (H2789_01590) - 334253..335281 (+) 1029 WP_347019413.1 PilW family protein -
  H2789_RS01590 (H2789_01595) - 335281..336027 (+) 747 WP_347019414.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16026.49 Da        Isoelectric Point: 9.2204

>NTDB_id=470485 H2789_RS01575 WP_347019411.1 333287..333733(+) (fimU) [Acinetobacter calcoaceticus strain NCIMB13260]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSFTQLMAKQRLNANTRELISTLSQGRSQAVLLRRNVTVHLVDGTNTNTD
FYWELTSGNRVTAPTSISSITFGRDGALVLGISADTDFVICNSTAKTQKSFALTRMGTVYLKNDGTCS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=470485 H2789_RS01575 WP_347019411.1 333287..333733(+) (fimU) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTCATGGTAACGATTGCGGTAATGGCTATTATCGCAAT
GATGGCTGCGCCGTCTTTTACTCAACTCATGGCAAAACAAAGATTAAATGCGAATACGAGAGAGTTGATCTCAACCTTAT
CTCAAGGGCGTAGCCAAGCTGTTTTATTAAGAAGAAATGTTACCGTTCATTTAGTTGATGGAACGAATACAAATACAGAT
TTTTATTGGGAACTCACTTCAGGAAATCGAGTAACTGCTCCAACATCGATAAGTAGTATTACTTTTGGTAGAGATGGAGC
GTTAGTTTTAGGTATTTCTGCTGACACGGATTTTGTAATTTGTAACTCAACAGCTAAAACTCAAAAATCCTTTGCGTTAA
CTCGGATGGGAACTGTTTATTTAAAAAATGATGGAACTTGCTCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

46.835

100

0.5