Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D1098_RS01220 Genome accession   NZ_CP069797
Coordinates   245228..245737 (+) Length   169 a.a.
NCBI ID   WP_005598178.1    Uniprot ID   A3N1L8
Organism   Actinobacillus pleuropneumoniae strain K17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 240228..250737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1098_RS01195 (D1098_01200) ybaK 240366..240842 (+) 477 WP_005604978.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -
  D1098_RS01200 (D1098_01205) ybfE 241051..241335 (+) 285 WP_005620439.1 LexA regulated protein -
  D1098_RS01205 (D1098_01210) fldA 241357..241881 (+) 525 WP_005598185.1 flavodoxin FldA -
  D1098_RS01210 (D1098_01215) fur 241910..242359 (+) 450 WP_005612673.1 ferric iron uptake transcriptional regulator -
  D1098_RS01215 (D1098_01220) - 242507..245173 (+) 2667 WP_005617705.1 PqiB family protein -
  D1098_RS01220 (D1098_01225) luxS 245228..245737 (+) 510 WP_005598178.1 S-ribosylhomocysteine lyase Regulator
  D1098_RS01225 (D1098_01230) - 245843..247687 (+) 1845 WP_009874807.1 ABC transporter ATP-binding protein -
  D1098_RS01230 (D1098_01235) - 247774..248337 (+) 564 WP_005604973.1 flavin reductase family protein -
  D1098_RS10930 (D1098_01240) - 248350..248397 (+) 48 Protein_226 SEC-C metal-binding domain-containing protein -
  D1098_RS01235 (D1098_01245) hxpB 248575..249225 (+) 651 WP_011848549.1 hexitol phosphatase HxpB -
  D1098_RS01240 (D1098_01250) tehA 249321..250271 (+) 951 WP_005617701.1 dicarboxylate transporter/tellurite-resistance protein TehA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18869.63 Da        Isoelectric Point: 5.2621

>NTDB_id=470413 D1098_RS01220 WP_005598178.1 245228..245737(+) (luxS) [Actinobacillus pleuropneumoniae strain K17]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFCRPNIDILPVRGIHTMEHLFAGFMRDHLNSESVEIIDISP
MGCRTGFYMSLIGAPSEADVVSAWTKSMEDALNKVPDVSKIPELNEYQCGSYKEHSLEEAHQIARDVLAKGIGVNRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=470413 D1098_RS01220 WP_005598178.1 245228..245737(+) (luxS) [Actinobacillus pleuropneumoniae strain K17]
ATGCCTTTATTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCACCGGCAGTGCGTGTTGCAAAAACGATGACGAC
GCCGAAGGGCGATACGATTACCGTATTCGATTTACGTTTTTGCCGTCCGAATATTGATATTTTACCGGTGCGTGGTATCC
ACACGATGGAACACTTATTTGCCGGCTTTATGCGTGATCATTTAAATAGTGAAAGTGTAGAAATTATTGATATTTCGCCG
ATGGGTTGCCGTACCGGTTTCTATATGTCGTTAATCGGTGCGCCAAGCGAAGCGGATGTGGTTTCGGCGTGGACAAAATC
GATGGAAGATGCTTTAAATAAAGTACCGGACGTGTCAAAAATTCCGGAATTAAACGAATATCAATGCGGCTCTTATAAAG
AGCATTCGCTTGAAGAAGCGCATCAAATCGCTCGTGATGTGTTAGCCAAGGGTATCGGCGTAAACCGTAACGAAGATTTA
GCGCTTGATGAGAAATTATTAAATCCATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

99.408

0.728