Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H2784_RS01565 Genome accession   NZ_CP059547
Coordinates   337023..337496 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 10_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332023..342496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2784_RS01540 (H2784_01540) - 332486..334591 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  H2784_RS01545 (H2784_01545) - 334631..334761 (-) 131 Protein_294 hypothetical protein -
  H2784_RS01550 (H2784_01550) rpoZ 334800..335078 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H2784_RS01555 (H2784_01555) gmk 335151..335780 (-) 630 WP_000015937.1 guanylate kinase -
  H2784_RS01560 (H2784_01560) ispH 335903..336853 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H2784_RS01565 (H2784_01565) fimU 337023..337496 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H2784_RS01570 (H2784_01570) pilV 337490..338050 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H2784_RS01575 (H2784_01575) pilW 338051..339052 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H2784_RS01580 (H2784_01580) pilX 339049..339867 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=470390 H2784_RS01565 WP_001214065.1 337023..337496(+) (fimU) [Acinetobacter baumannii strain 10_3]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=470390 H2784_RS01565 WP_001214065.1 337023..337496(+) (fimU) [Acinetobacter baumannii strain 10_3]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1