Detailed information NTG0047039

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPPN120_RS00190
• Genome accession: NC_017378
• Coordinates: 34468..35523 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786663.1
• Uniprot ID: -
• Organism: Helicobacter pylori Puno120
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29468..40523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPN120_RS00160 (HPPN120_00150)	-	29878..30291 (+)	414	WP_001023004.1	universal stress protein	-
HPPN120_RS00165 (HPPN120_00155)	-	30306..30581 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HPPN120_RS00170 (HPPN120_00160)	-	30581..32803 (+)	2223	WP_001051547.1	AAA family ATPase	-
HPPN120_RS00175 (HPPN120_00165)	panD	32793..33143 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HPPN120_RS00180 (HPPN120_00170)	-	33154..33456 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPPN120_RS00185 (HPPN120_00175)	-	33456..34460 (+)	1005	WP_000468450.1	PDZ domain-containing protein	-
HPPN120_RS00190 (HPPN120_00180)	comB6	34468..35523 (+)	1056	WP_000786663.1	P-type conjugative transfer protein TrbL	Machinery gene
HPPN120_RS07855	comB7	35539..35652 (+)	114	WP_075645715.1	comB7 lipoprotein	Machinery gene
HPPN120_RS00195 (HPPN120_00185)	comB8	35649..36392 (+)	744	WP_000660499.1	type IV secretion system protein	Machinery gene
HPPN120_RS00200 (HPPN120_00190)	comB9	36392..37363 (+)	972	WP_014536837.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPPN120_RS00205 (HPPN120_00195)	comB10	37356..38492 (+)	1137	WP_001045862.1	DNA type IV secretion system protein ComB10	Machinery gene
HPPN120_RS00210 (HPPN120_00200)	-	38562..39974 (+)	1413	WP_000694829.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39763.69 Da
• Isoelectric Point: 8.8165

>NTDB_id=47039 HPPN120_RS00190 WP_000786663.1 34468..35523(+) (comB6) [Helicobacter pylori Puno120]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSVNLSQNALNSLQYITNPPASSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=47039 HPPN120_RS00190 WP_000786663.1 34468..35523(+) (comB6) [Helicobacter pylori Puno120]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGTGTTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGAACCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966