Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H2784_RS01455 Genome accession   NZ_CP059547
Coordinates   311733..312260 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 10_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306733..317260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2784_RS01440 (H2784_01440) pilM 309286..310344 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H2784_RS01445 (H2784_01445) pilN 310344..310985 (+) 642 WP_223069827.1 PilN domain-containing protein Machinery gene
  H2784_RS01450 (H2784_01450) pilO 310982..311722 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2784_RS01455 (H2784_01455) pilP 311733..312260 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H2784_RS01460 (H2784_01460) pilQ 312323..314488 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H2784_RS01465 (H2784_01465) aroK 314500..315069 (+) 570 WP_000643712.1 shikimate kinase AroK -
  H2784_RS01470 (H2784_01470) aroB 315098..316180 (+) 1083 WP_223069829.1 3-dehydroquinate synthase -
  H2784_RS01475 (H2784_01475) - 316196..317071 (+) 876 WP_000218807.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=470387 H2784_RS01455 WP_000695065.1 311733..312260(+) (pilP) [Acinetobacter baumannii strain 10_3]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=470387 H2784_RS01455 WP_000695065.1 311733..312260(+) (pilP) [Acinetobacter baumannii strain 10_3]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714