Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H2785_RS16400 Genome accession   NZ_CP059546
Coordinates   3522277..3522603 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 10_4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517277..3527603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS16380 (H2785_16385) - 3517377..3518006 (-) 630 WP_000219974.1 FHA domain-containing protein -
  H2785_RS16385 (H2785_16390) gspD 3518047..3520323 (-) 2277 WP_031959801.1 type II secretion system secretin GspD -
  H2785_RS16390 (H2785_16395) - 3520365..3521201 (-) 837 WP_000870031.1 type II secretion system protein N -
  H2785_RS16395 (H2785_16400) gspN 3521201..3521944 (-) 744 WP_000730343.1 type II secretion system protein N -
  H2785_RS16400 (H2785_16405) hns 3522277..3522603 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  H2785_RS16405 (H2785_16410) - 3522798..3523238 (-) 441 WP_223069697.1 acyl-CoA thioesterase -
  H2785_RS16410 (H2785_16415) - 3523246..3524439 (-) 1194 WP_000681771.1 hypothetical protein -
  H2785_RS16415 (H2785_16420) - 3524449..3525288 (-) 840 WP_001230201.1 hypothetical protein -
  H2785_RS16420 (H2785_16425) - 3525297..3526064 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  H2785_RS16425 (H2785_16430) hemC 3526069..3526986 (-) 918 WP_223069698.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=470373 H2785_RS16400 WP_000801427.1 3522277..3522603(-) (hns) [Acinetobacter baumannii strain 10_4]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470373 H2785_RS16400 WP_000801427.1 3522277..3522603(-) (hns) [Acinetobacter baumannii strain 10_4]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1