Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D1099_RS03945 Genome accession   NZ_CP069796
Coordinates   825302..826846 (-) Length   514 a.a.
NCBI ID   WP_005607541.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 6 str. Femo     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820302..831846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1099_RS03920 (D1099_03895) efeO 821185..821997 (+) 813 WP_005607533.1 iron uptake system protein EfeO -
  D1099_RS03925 (D1099_03900) efeB 822009..823202 (+) 1194 WP_005607535.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1099_RS03930 (D1099_03905) - 823213..823833 (+) 621 WP_005607537.1 hypothetical protein -
  D1099_RS03935 (D1099_03910) - 823873..824691 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1099_RS03940 (D1099_03915) - 824695..825285 (-) 591 WP_005607539.1 hypothetical protein -
  D1099_RS03945 (D1099_03920) sbcB 825302..826846 (-) 1545 WP_005607541.1 exodeoxyribonuclease I Machinery gene
  D1099_RS03950 (D1099_03925) - 827088..828494 (-) 1407 WP_005607543.1 chloride channel protein -
  D1099_RS03955 (D1099_03930) asnS 828702..830105 (+) 1404 WP_005607545.1 asparagine--tRNA ligase -
  D1099_RS03960 (D1099_03935) epmB 830207..831208 (-) 1002 WP_005607548.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58605.68 Da        Isoelectric Point: 5.7736

>NTDB_id=470366 D1099_RS03945 WP_005607541.1 825302..826846(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANEQNEQLVSALNQVAEQRVNKAAKLEMLKTLIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=470366 D1099_RS03945 WP_005607541.1 825302..826846(-) (sbcB) [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAGAATCGTGGTAAGAAGGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTGCATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAAGCGAATAAAAGTTTAGTGCGCGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAGCCTTCTGCGAATGTGGAAACGACTCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGTCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAATTCGCCGATGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGAACAAAATGAACAGTTGGTTTCAGCCTTAAACCAAGTAGCGGAACAGAGGGTGAATAAAGCGGCGAAGTTGGA
AATGCTAAAGACATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

54.176

90.856

0.492