Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H2786_RS17435 Genome accession   NZ_CP059542
Coordinates   3664439..3664765 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain E-011922     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3659439..3669765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS17415 (H2786_17410) - 3659546..3660175 (-) 630 WP_000219967.1 FHA domain-containing protein -
  H2786_RS17420 (H2786_17415) gspD 3660216..3662486 (-) 2271 WP_123793899.1 type II secretion system secretin GspD -
  H2786_RS17425 (H2786_17420) - 3662528..3663364 (-) 837 WP_000870031.1 type II secretion system protein N -
  H2786_RS17430 (H2786_17425) gspN 3663364..3664107 (-) 744 WP_123793895.1 type II secretion system protein N -
  H2786_RS17435 (H2786_17430) hns 3664439..3664765 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  H2786_RS17440 (H2786_17435) - 3664960..3665400 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  H2786_RS17445 (H2786_17440) - 3665408..3666601 (-) 1194 WP_047479601.1 membrane protein -
  H2786_RS17450 (H2786_17445) - 3666611..3667450 (-) 840 WP_001230201.1 hypothetical protein -
  H2786_RS17455 (H2786_17450) - 3667459..3668226 (-) 768 WP_002062374.1 uroporphyrinogen-III synthase -
  H2786_RS17460 (H2786_17455) hemC 3668231..3669148 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=470325 H2786_RS17435 WP_000801427.1 3664439..3664765(-) (hns) [Acinetobacter baumannii strain E-011922]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470325 H2786_RS17435 WP_000801427.1 3664439..3664765(-) (hns) [Acinetobacter baumannii strain E-011922]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1