Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSNT_RS06645 Genome accession   NC_017376
Coordinates   1375010..1376323 (-) Length   437 a.a.
NCBI ID   WP_000653623.1    Uniprot ID   G2MEZ7
Organism   Helicobacter pylori SNT49     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370010..1381323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSNT_RS06615 (HPSNT_06785) nadC 1370479..1371300 (-) 822 WP_000405981.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPSNT_RS06620 (HPSNT_06790) nadA 1371300..1372304 (-) 1005 WP_001141764.1 quinolinate synthase NadA -
  HPSNT_RS06625 (HPSNT_06795) - 1372294..1373097 (-) 804 WP_000226225.1 phosphatidylserine decarboxylase -
  HPSNT_RS06630 (HPSNT_06800) - 1373091..1373597 (-) 507 WP_000953074.1 DUF6115 domain-containing protein -
  HPSNT_RS06635 (HPSNT_06805) - 1373610..1374104 (-) 495 WP_014536804.1 hypothetical protein -
  HPSNT_RS06640 (HPSNT_06810) mqnP 1374097..1374981 (-) 885 WP_000913961.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSNT_RS06645 (HPSNT_06815) comEC/comE3 1375010..1376323 (-) 1314 WP_000653623.1 ComEC/Rec2 family competence protein Machinery gene
  HPSNT_RS06650 (HPSNT_06820) - 1376320..1377786 (-) 1467 WP_000349756.1 replicative DNA helicase -
  HPSNT_RS06655 (HPSNT_06825) - 1377797..1379191 (-) 1395 WP_000954083.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSNT_RS06660 (HPSNT_06830) crdS 1379194..1380396 (-) 1203 WP_080004682.1 copper-sensing histidine kinase CrdS -
  HPSNT_RS06665 (HPSNT_06835) crdR 1380362..1381003 (-) 642 WP_001169777.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50208.18 Da        Isoelectric Point: 9.9128

>NTDB_id=47032 HPSNT_RS06645 WP_000653623.1 1375010..1376323(-) (comEC/comE3) [Helicobacter pylori SNT49]
MKDKTFQGAFELLTTPKEYLVCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSRGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANTLGINHLLAISGFHLGILSASVYFLFSLVYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKSSSFLMRSFQAISLS
ALVFLNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLAIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=47032 HPSNT_RS06645 WP_000653623.1 1375010..1376323(-) (comEC/comE3) [Helicobacter pylori SNT49]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACCTGGTGTGTGGGGTCATTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAGGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTCTTAGAGTCTCTCAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAACGCTTTAGTAGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACACGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTGTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAATCCTCTTCTTTTTTGATGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGTATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MEZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.339

100

0.963

Multiple sequence alignment