Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JR441_RS18745 Genome accession   NZ_CP069789
Coordinates   3652835..3653968 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647835..3658968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS18705 (JR441_18705) ywnA 3647998..3648399 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  JR441_RS18710 (JR441_18710) ureC 3648534..3650243 (-) 1710 WP_198878436.1 urease subunit alpha -
  JR441_RS18715 (JR441_18715) ureB 3650240..3650614 (-) 375 WP_003227726.1 urease subunit beta -
  JR441_RS18720 (JR441_18720) ureA 3650611..3650928 (-) 318 WP_198878435.1 urease subunit gamma -
  JR441_RS18725 (JR441_18725) - 3651120..3651280 (-) 161 Protein_3655 hypothetical protein -
  JR441_RS18730 (JR441_18730) - 3651514..3651726 (-) 213 Protein_3656 urea ABC transporter substrate-binding protein -
  JR441_RS18735 (JR441_18735) csbD 3651941..3652129 (-) 189 WP_003227718.1 stress response protein CsbD -
  JR441_RS18740 (JR441_18740) - 3652202..3652681 (-) 480 WP_198878434.1 hypothetical protein -
  JR441_RS18745 (JR441_18745) rapC 3652835..3653968 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  JR441_RS18750 (JR441_18750) moaA 3654160..3655185 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  JR441_RS18755 (JR441_18755) fdhD 3655201..3655989 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  JR441_RS18760 (JR441_18760) - 3656222..3656383 (-) 162 WP_003227706.1 hypothetical protein -
  JR441_RS18765 (JR441_18765) ywmD 3656478..3657152 (-) 675 WP_003243553.1 VWA domain-containing protein -
  JR441_RS18770 (JR441_18770) - 3657205..3657345 (-) 141 WP_198878433.1 hypothetical protein -
  JR441_RS18775 (JR441_18775) ywmC 3657476..3658159 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=470279 JR441_RS18745 WP_015251020.1 3652835..3653968(-) (rapC) [Bacillus subtilis strain BIM B-569G]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=470279 JR441_RS18745 WP_015251020.1 3652835..3653968(-) (rapC) [Bacillus subtilis strain BIM B-569G]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424