Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H1Q58_RS07745 Genome accession   NZ_CP059540
Coordinates   1547707..1549404 (+) Length   565 a.a.
NCBI ID   WP_069575862.1    Uniprot ID   A0A7D7MC76
Organism   Planococcus maritimus strain XJ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1542707..1554404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q58_RS07720 (H1Q58_07720) xseB 1543110..1543346 (+) 237 WP_068488335.1 exodeoxyribonuclease VII small subunit -
  H1Q58_RS07725 (H1Q58_07725) - 1543343..1544221 (+) 879 WP_068488334.1 polyprenyl synthetase family protein -
  H1Q58_RS07730 (H1Q58_07730) dxs 1544315..1546219 (+) 1905 WP_182093306.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H1Q58_RS07735 (H1Q58_07735) - 1546216..1547061 (+) 846 WP_182093307.1 TlyA family RNA methyltransferase -
  H1Q58_RS07740 (H1Q58_07740) argR 1547239..1547688 (+) 450 WP_058380870.1 transcriptional regulator ArgR -
  H1Q58_RS07745 (H1Q58_07745) recN 1547707..1549404 (+) 1698 WP_069575862.1 DNA repair protein RecN Machinery gene
  H1Q58_RS07750 (H1Q58_07750) spo0A 1549438..1550196 (+) 759 WP_182093308.1 sporulation transcription factor Spo0A -
  H1Q58_RS07755 (H1Q58_07755) - 1550388..1551146 (+) 759 WP_182093309.1 glycerophosphodiester phosphodiesterase family protein -
  H1Q58_RS07760 (H1Q58_07760) - 1551187..1551423 (-) 237 WP_101190263.1 DUF2627 domain-containing protein -
  H1Q58_RS07765 (H1Q58_07765) - 1551552..1553594 (+) 2043 WP_182093310.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63687.68 Da        Isoelectric Point: 5.8385

>NTDB_id=470267 H1Q58_RS07745 WP_069575862.1 1547707..1549404(+) (recN) [Planococcus maritimus strain XJ11]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFHIDSAAHPVHRK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKLLTKAK
ESYNHTFEKYTKLKREFATYNENEQQIAQRIDLLTFQLREIEEAQLVPGEEETLLDERKRLQNFTKIYESISQAHEAIQG
ESKGLDWVGNAMSELEHAASVDEQFQEASESVAGAFYQLQDTSTEIKRILDQLEFDPERLNDIEQRLALLQSLKRKYGAS
VEDMLLYQEEQADELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTMLRKQAATKLSKAIMEQLKELHMGKASFAVQFN
LLPKGKFDRFGQDSIAFHISTNVGEPLKALTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTAVKELAGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=470267 H1Q58_RS07745 WP_069575862.1 1547707..1549404(+) (recN) [Planococcus maritimus strain XJ11]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATCATTGATACATTATCGGTCAGTTTTACAGAAGGCATGACCGTTTT
GACAGGAGAAACCGGTGCAGGGAAATCGATTATTATCGATGCTGTGCATTTATTGGCTGGCGGTCGGGGCAGTCAGGAAT
TTATTCGCCACGGGGCGCAAAAAGCTGAGATTGAAGGATTGTTCCATATCGACAGTGCGGCGCATCCTGTCCATCGCAAG
CTCGAGGATTTTGGCATCCAGGCGAGCGACGGCGATGTATTATTGCGGCGTGAGTTGAATGGCAAAGGCAAAAATGTTTG
CCGCATCAACGGCAAGCTAGTGACCATTTCCATCTTGCGTGAAGTGGGGGCTGCATTGATTGATATCCACGGCCAACATG
AAACCCAGGAATTGATGGATGAAAAACAACATTTGCACCTATTGGATCAATTTGCCGGGAAACTCCTGACCAAAGCAAAA
GAAAGCTATAATCATACGTTTGAAAAATACACGAAACTAAAGCGAGAATTTGCGACTTATAACGAAAACGAGCAACAGAT
TGCCCAACGCATTGATTTGCTGACATTTCAATTGCGTGAAATTGAAGAAGCGCAGCTCGTGCCTGGCGAAGAAGAAACCT
TGCTCGACGAACGTAAACGCTTGCAGAATTTCACTAAAATTTACGAATCGATCTCACAAGCTCACGAAGCGATTCAAGGA
GAGTCGAAAGGACTTGATTGGGTCGGCAATGCCATGAGCGAACTCGAGCATGCCGCATCAGTCGATGAACAATTCCAAGA
GGCTTCAGAATCGGTGGCAGGGGCGTTTTATCAATTGCAGGATACTTCAACGGAAATCAAGCGCATCTTGGATCAATTGG
AATTCGATCCGGAACGGCTTAATGACATCGAACAGCGCCTTGCTTTATTGCAATCTTTGAAACGCAAATATGGCGCATCG
GTTGAAGATATGCTGCTGTATCAAGAAGAACAGGCAGATGAACTGGATAAACTGCTGAATCGCGACCAGCGTTTGCGCCT
CGATCAAGAAAAGCTCAAAGAGTTGACCGAGGACTTGCGCATCGAAGCGGAAGAATTGACGATGCTTAGAAAACAAGCGG
CGACGAAATTATCGAAAGCAATCATGGAACAATTGAAAGAACTTCATATGGGCAAAGCGTCATTCGCAGTCCAATTCAAT
TTGTTGCCAAAAGGCAAATTCGATCGCTTTGGCCAGGACAGCATCGCTTTCCATATCTCGACAAATGTCGGCGAGCCATT
GAAAGCGTTAACGAAAGTGGCATCAGGCGGCGAATTGTCGCGTATGATGCTGGCGCTGAAAACGATTTTCTCCAAGCACC
AAGGCATTACGTCGATCATTTTCGATGAAGTCGATACAGGCGTCAGTGGCCGGGTGGCGCAGGCAATCGCTGAAAAAATC
GCAGCCATTGCCCGCCATTCACAGGTGCTATGTATTTCGCATCTGCCACAAGTTGCCGCGATGGCAGACCAGCATCTGTT
TATCGAGAAAAAAGTATCAAAAGACCGTACCACGACTGCGGTAAAAGAACTTGCAGGGCGTAAACGTACGGAAGAAATGA
GCCGCATGCTGTCAGGAGCAGAAATCACTGAATTAACGTTACAGCATGCTGATGAATTGCTGACTTTGGCGAGGGACCGG
AAGTTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7MC76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.579

100

0.52