Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H1Q58_RS00495 Genome accession   NZ_CP059540
Coordinates   101130..102512 (+) Length   460 a.a.
NCBI ID   WP_182092156.1    Uniprot ID   A0A7D7MIK0
Organism   Planococcus maritimus strain XJ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96130..107512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q58_RS00470 (H1Q58_00470) - 96148..96393 (+) 246 WP_182092151.1 hypothetical protein -
  H1Q58_RS00475 (H1Q58_00475) - 96533..97018 (+) 486 WP_182092152.1 CtsR family transcriptional regulator -
  H1Q58_RS00480 (H1Q58_00480) - 97015..97548 (+) 534 WP_182092153.1 UvrB/UvrC motif-containing protein -
  H1Q58_RS00485 (H1Q58_00485) - 97538..98629 (+) 1092 WP_182092154.1 protein arginine kinase -
  H1Q58_RS00490 (H1Q58_00490) - 98626..101070 (+) 2445 WP_182092155.1 ATP-dependent Clp protease ATP-binding subunit -
  H1Q58_RS00495 (H1Q58_00495) radA 101130..102512 (+) 1383 WP_182092156.1 DNA repair protein RadA Machinery gene
  H1Q58_RS00500 (H1Q58_00500) - 102615..103715 (+) 1101 WP_182092157.1 PIN/TRAM domain-containing protein -
  H1Q58_RS00505 (H1Q58_00505) ispD 103728..104423 (+) 696 WP_182092158.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  H1Q58_RS00510 (H1Q58_00510) ispF 104420..104920 (+) 501 WP_058382195.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  H1Q58_RS00515 (H1Q58_00515) gltX 104963..106426 (+) 1464 WP_182092159.1 glutamate--tRNA ligase -
  H1Q58_RS00520 (H1Q58_00520) cysE 106736..107410 (+) 675 WP_182092160.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50226.99 Da        Isoelectric Point: 7.1425

>NTDB_id=470255 H1Q58_RS00495 WP_182092156.1 101130..102512(+) (radA) [Planococcus maritimus strain XJ11]
MAKKKIKFICQSCGYESAKWMGKCPGCAAWNTMTEETEVAAPKGTRGAFQHSAPQIAQKATPINSIETKEEPRTKTEMEE
LNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQVSALLAKAGKKVLYISGEESIRQTKMRAERLNAVSGDLLIFAETNLELI
HHTIEEVEPDFVIVDSIQTVYHPEVTSAPGSVTQVRESTAELMRVAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLY
FEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGTAGSTVVASMEGTRPILVEIQALVTPSS
FNYPKRMATGIDQNRVSLLMAVLEKRVGLMLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDTAPKVDDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFKRAIIPKSNMGGWDFPEGIRVVGVETINEALKELFPQQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=470255 H1Q58_RS00495 WP_182092156.1 101130..102512(+) (radA) [Planococcus maritimus strain XJ11]
ATGGCGAAGAAGAAAATAAAGTTCATCTGCCAATCCTGCGGTTATGAGTCTGCAAAATGGATGGGGAAATGCCCAGGCTG
TGCAGCATGGAATACCATGACAGAAGAAACGGAAGTGGCAGCACCGAAAGGCACCAGAGGCGCATTCCAGCATAGCGCAC
CACAAATCGCCCAAAAAGCCACACCAATCAATTCGATTGAGACAAAAGAAGAACCACGCACGAAAACGGAAATGGAAGAG
CTCAACCGTGTACTCGGCGGCGGGATTGTGTCCGGTTCACTCGTGCTGATCGGCGGAGATCCAGGGATCGGGAAGTCCAC
TTTACTCCTGCAAGTATCTGCGCTGCTAGCAAAAGCAGGCAAGAAAGTGTTGTATATTTCAGGTGAGGAATCCATTCGCC
AAACAAAAATGCGGGCAGAGCGGCTTAATGCGGTGTCGGGAGATTTATTGATTTTTGCAGAAACCAATTTGGAATTGATC
CATCACACAATTGAAGAGGTAGAGCCGGATTTCGTCATTGTCGACTCAATTCAGACGGTCTATCATCCAGAGGTGACATC
TGCTCCGGGCAGTGTGACACAGGTGCGCGAGAGTACAGCCGAATTGATGCGGGTGGCAAAAACAAAGAATATCGCGATTT
TCCTCGTCGGCCACGTGACAAAAGAAGGCCAAATCGCCGGGCCGCGCATTTTGGAACATATGGTGGATACGGTGCTGTAT
TTTGAAGGCGAGCGCCACCACACGTATCGAATTTTGCGCAGTGTTAAAAACCGTTTTGGTTCGACGAATGAAATTGCGAT
TTTCGAAATGCTGCAAGGCGGGTTAAAGGAAGTGTTGAACCCATCCGAGCTGTTTTTACAGGAACGCTCAAGCGGCACAG
CGGGATCGACGGTGGTCGCTTCGATGGAAGGGACACGGCCAATTTTGGTAGAGATTCAGGCATTAGTTACACCATCAAGC
TTTAATTACCCGAAACGCATGGCGACAGGGATTGATCAGAACCGGGTGTCGTTATTGATGGCGGTGCTTGAAAAACGAGT
TGGTTTGATGCTGCAGTCGCAGGATGCATATATTAAAGTCGCAGGCGGCGTCAAATTGGATGAACCGGCGATCGATCTTG
CGGTACTCGCGAGCATTGTTTCAAGTTTCCGGGACACTGCGCCAAAAGTGGACGATTGCATCATTGGGGAAGTCGGGTTG
ACTGGAGAGGTAAGACGGGTGTCGCGTATCGAGCAGCGCGTGCAAGAAGCAGCAAAGCTTGGGTTTAAACGCGCCATCAT
TCCGAAATCAAATATGGGTGGCTGGGATTTTCCGGAAGGAATACGCGTCGTAGGTGTGGAAACTATAAACGAGGCGCTGA
AGGAATTATTCCCACAACAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(357-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7MIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.687

98.696

0.717
  radA Streptococcus pneumoniae Rx1

61.656

99.783

0.615
  radA Streptococcus pneumoniae D39

61.656

99.783

0.615
  radA Streptococcus pneumoniae R6

61.656

99.783

0.615
  radA Streptococcus pneumoniae TIGR4

61.656

99.783

0.615
  radA Streptococcus mitis NCTC 12261

61.656

99.783

0.615
  radA Streptococcus mitis SK321

61.656

99.783

0.615