Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H2N97_RS12975 Genome accession   NZ_CP059497
Coordinates   2649861..2650628 (-) Length   255 a.a.
NCBI ID   WP_017418171.1    Uniprot ID   -
Organism   Bacillus velezensis strain JSRB 08     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2644861..2655628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS12955 (H2N97_12955) - 2645064..2645876 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  H2N97_RS12960 (H2N97_12960) ccpN 2645902..2646540 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  H2N97_RS12965 (H2N97_12965) glyS 2646640..2648679 (-) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  H2N97_RS12970 (H2N97_12970) glyQ 2648672..2649559 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  H2N97_RS12975 (H2N97_12975) recO 2649861..2650628 (-) 768 WP_017418171.1 DNA repair protein RecO Machinery gene
  H2N97_RS12980 (H2N97_12980) - 2650665..2650808 (-) 144 WP_007408286.1 YqzL family protein -
  H2N97_RS12985 (H2N97_12985) era 2650964..2651869 (-) 906 WP_014470680.1 GTPase Era -
  H2N97_RS12990 (H2N97_12990) - 2651850..2652260 (-) 411 WP_017418172.1 cytidine deaminase -
  H2N97_RS12995 (H2N97_12995) - 2652384..2652758 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  H2N97_RS13000 (H2N97_13000) ybeY 2652739..2653212 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  H2N97_RS13005 (H2N97_13005) - 2653213..2655345 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.94 Da        Isoelectric Point: 8.5625

>NTDB_id=470221 H2N97_RS12975 WP_017418171.1 2649861..2650628(-) (recO) [Bacillus velezensis strain JSRB 08]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=470221 H2N97_RS12975 WP_017418171.1 2649861..2650628(-) (recO) [Bacillus velezensis strain JSRB 08]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894