Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   JR441_RS08170 Genome accession   NZ_CP069789
Coordinates   1557688..1558137 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain BIM B-569G     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552688..1563137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS08130 (JR441_08130) ctaE 1552704..1553327 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  JR441_RS08135 (JR441_08135) ctaF 1553330..1553662 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  JR441_RS08140 (JR441_08140) ctaG 1553690..1554583 (+) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  JR441_RS08145 (JR441_08145) ylbA 1554615..1554977 (-) 363 WP_003232238.1 YugN family protein -
  JR441_RS08150 (JR441_08150) ylbB 1555117..1555563 (+) 447 WP_003221362.1 CBS domain-containing protein -
  JR441_RS08155 (JR441_08155) ylbC 1555647..1556687 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  JR441_RS08160 (JR441_08160) ylbD 1556919..1557317 (+) 399 WP_003232233.1 YlbD family protein -
  JR441_RS08165 (JR441_08165) ylbE 1557333..1557572 (+) 240 WP_003232231.1 YlbE-like family protein -
  JR441_RS08170 (JR441_08170) ylbF 1557688..1558137 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  JR441_RS08175 (JR441_08175) ylbG 1558192..1558464 (+) 273 WP_015715839.1 YlbG family protein -
  JR441_RS08180 (JR441_08180) rsmD 1558787..1559341 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JR441_RS08185 (JR441_08185) coaD 1559346..1559831 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  JR441_RS08190 (JR441_08190) spoVV 1559842..1561068 (-) 1227 WP_046664166.1 dipicolinic acid transporter SpoVV -
  JR441_RS08195 (JR441_08195) ylbK 1561249..1562031 (+) 783 WP_021479345.1 patatin family protein -
  JR441_RS08200 (JR441_08200) sepM 1562033..1563058 (+) 1026 WP_046664167.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=470205 JR441_RS08170 WP_003221370.1 1557688..1558137(+) (ylbF) [Bacillus subtilis strain BIM B-569G]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=470205 JR441_RS08170 WP_003221370.1 1557688..1558137(+) (ylbF) [Bacillus subtilis strain BIM B-569G]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1