Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H2N97_RS08365 Genome accession   NZ_CP059497
Coordinates   1725746..1726525 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain JSRB 08     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1720746..1731525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS08345 (H2N97_08345) trmFO 1721433..1722740 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H2N97_RS08350 (H2N97_08350) xerC 1722810..1723727 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  H2N97_RS08355 (H2N97_08355) hslV 1723743..1724288 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  H2N97_RS08360 (H2N97_08360) hslU 1724305..1725708 (+) 1404 WP_017417774.1 HslU--HslV peptidase ATPase subunit -
  H2N97_RS08365 (H2N97_08365) codY 1725746..1726525 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H2N97_RS08370 (H2N97_08370) flgB 1726879..1727268 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  H2N97_RS08375 (H2N97_08375) flgC 1727268..1727720 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  H2N97_RS08380 (H2N97_08380) fliE 1727731..1728051 (+) 321 WP_017417776.1 flagellar hook-basal body complex protein FliE -
  H2N97_RS08385 (H2N97_08385) fliF 1728094..1729704 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  H2N97_RS08390 (H2N97_08390) fliG 1729717..1730733 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  H2N97_RS08395 (H2N97_08395) fliH 1730726..1731481 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=470206 H2N97_RS08365 WP_003154263.1 1725746..1726525(+) (codY) [Bacillus velezensis strain JSRB 08]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=470206 H2N97_RS08365 WP_003154263.1 1725746..1726525(+) (codY) [Bacillus velezensis strain JSRB 08]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471