Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPSNT_RS00090 Genome accession   NC_017376
Coordinates   13744..14025 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori SNT49     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8744..19025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSNT_RS00070 (HPSNT_00045) groES 9321..9677 (-) 357 WP_000671931.1 co-chaperone GroES -
  HPSNT_RS00075 (HPSNT_00050) dnaG 9951..11630 (+) 1680 WP_000601578.1 DNA primase -
  HPSNT_RS00080 (HPSNT_00055) - 11627..12679 (+) 1053 WP_000721183.1 MnmA/TRMU family protein -
  HPSNT_RS00085 (HPSNT_00060) - 12771..13598 (+) 828 WP_001154897.1 DUF5718 family protein -
  HPSNT_RS00090 (HPSNT_00065) comB2 13744..14025 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPSNT_RS00095 (HPSNT_00070) comB3 14025..14288 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  HPSNT_RS00100 (HPSNT_00075) comB4 14290..16653 (+) 2364 WP_000890520.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPSNT_RS00105 (HPSNT_00080) - 16974..18314 (+) 1341 WP_014536644.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=47016 HPSNT_RS00090 WP_001272686.1 13744..14025(+) (comB2) [Helicobacter pylori SNT49]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=47016 HPSNT_RS00090 WP_001272686.1 13744..14025(+) (comB2) [Helicobacter pylori SNT49]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGGATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment