Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JSQ77_RS08645 Genome accession   NZ_CP069712
Coordinates   1833791..1835218 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain EA13     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828791..1840218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ77_RS08610 (JSQ77_08615) hisL 1829375..1829425 (-) 51 WP_001364200.1 his operon leader peptide -
  JSQ77_RS08615 (JSQ77_08620) yefM 1829708..1829959 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JSQ77_RS08620 (JSQ77_08625) yoeB 1829956..1830210 (+) 255 WP_106631568.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JSQ77_RS08625 (JSQ77_08630) yeeZ 1830293..1831117 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  JSQ77_RS08630 (JSQ77_08635) yeeY 1831163..1832092 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JSQ77_RS08635 (JSQ77_08640) yoeI 1832307..1832369 (+) 63 WP_010723108.1 membrane protein YoeI -
  JSQ77_RS08640 (JSQ77_08645) plaP 1832359..1833717 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JSQ77_RS08645 (JSQ77_08650) sbcB 1833791..1835218 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  JSQ77_RS08650 (JSQ77_08655) dacD 1835427..1836593 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JSQ77_RS08655 (JSQ77_08660) sbmC 1836712..1837185 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  JSQ77_RS08660 (JSQ77_08665) yeeA 1837383..1838441 (+) 1059 WP_001200891.1 FUSC family protein -
  JSQ77_RS08665 (JSQ77_08670) tmaR 1838613..1838942 (+) 330 WP_000450409.1 DUF496 family protein -
  JSQ77_RS25115 - 1839043..1839366 (-) 324 WP_352145865.1 EutP/PduV family microcompartment system protein -
  JSQ77_RS24820 - 1839345..1839425 (+) 81 WP_023441679.1 hypothetical protein -
  JSQ77_RS08680 (JSQ77_08685) - 1839714..1839794 (-) 81 Protein_1716 hypothetical protein -
  JSQ77_RS08685 (JSQ77_08690) yeeW 1839840..1840034 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=470098 JSQ77_RS08645 WP_000980607.1 1833791..1835218(-) (sbcB) [Escherichia coli strain EA13]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=470098 JSQ77_RS08645 WP_000980607.1 1833791..1835218(-) (sbcB) [Escherichia coli strain EA13]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583