Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H2R00_RS13060 Genome accession   NZ_CP059494
Coordinates   2668649..2669095 (+) Length   148 a.a.
NCBI ID   WP_182069366.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2663649..2674095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS13040 - 2664787..2665527 (+) 741 WP_182069361.1 LXG domain-containing protein -
  H2R00_RS13045 - 2665645..2667348 (+) 1704 WP_182069363.1 methyl-accepting chemotaxis protein -
  H2R00_RS13050 - 2667368..2668171 (-) 804 WP_182069365.1 protein kinase -
  H2R00_RS13055 - 2668177..2668380 (-) 204 WP_128814219.1 hypothetical protein -
  H2R00_RS13060 nucA/comI 2668649..2669095 (+) 447 WP_182069366.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H2R00_RS13065 - 2669113..2669511 (+) 399 WP_154995495.1 competence protein ComJ -
  H2R00_RS13070 - 2669552..2670988 (-) 1437 WP_154995497.1 family 1 glycosylhydrolase -
  H2R00_RS13075 - 2671058..2671783 (-) 726 WP_182069367.1 AAA family ATPase -
  H2R00_RS13080 - 2671880..2672431 (-) 552 WP_182069368.1 NAD(P)H-dependent oxidoreductase -
  H2R00_RS13085 - 2672615..2673490 (+) 876 WP_182069369.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16349.38 Da        Isoelectric Point: 5.7093

>NTDB_id=470072 H2R00_RS13060 WP_182069366.1 2668649..2669095(+) (nucA/comI) [Bacillus haynesii strain P19]
MDKIKSLLITLLAIAVVIIGIISGDFFTSEHQPTGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYIRPSDNRGAGSWVGNQVSDYPDGTKVLFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=470072 H2R00_RS13060 WP_182069366.1 2668649..2669095(+) (nucA/comI) [Bacillus haynesii strain P19]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCATCGCCGTCGTGATCATCGGCATTATATCTGGCGACTTTTT
TACTTCAGAACATCAGCCTACTGGCCGGCAAAACGGCTCAAACTATGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAAGCCATCAAAAAAGGGCATTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCAGAAAGGATTCATTAAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGGCCGTCTGATAACCGCGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGATGGGACGAAGGTACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642