Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   H2R00_RS09455 Genome accession   NZ_CP059494
Coordinates   1905993..1906571 (-) Length   192 a.a.
NCBI ID   WP_154999609.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900993..1911571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS09435 - 1902348..1904123 (+) 1776 WP_182070919.1 S8 family peptidase -
  H2R00_RS09440 lepB 1904285..1904803 (-) 519 WP_043927308.1 signal peptidase I -
  H2R00_RS09445 - 1904816..1905427 (-) 612 WP_043927307.1 TVP38/TMEM64 family protein -
  H2R00_RS09450 - 1905634..1905999 (+) 366 WP_152847534.1 hypothetical protein -
  H2R00_RS09455 comK 1905993..1906571 (-) 579 WP_154999609.1 competence protein ComK Regulator
  H2R00_RS09460 - 1906844..1907077 (+) 234 WP_003180353.1 IDEAL domain-containing protein -
  H2R00_RS09465 - 1907145..1908002 (-) 858 WP_043927304.1 SDR family oxidoreductase -
  H2R00_RS09470 - 1908122..1909672 (+) 1551 WP_182070920.1 FAD-dependent oxidoreductase -
  H2R00_RS09475 - 1909778..1911067 (+) 1290 WP_154999606.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22362.59 Da        Isoelectric Point: 7.8088

>NTDB_id=470064 H2R00_RS09455 WP_154999609.1 1905993..1906571(-) (comK) [Bacillus haynesii strain P19]
MSTEDMTKDTYEVNGSTMAVLPLGEGEKPASKILETERTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNELIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=470064 H2R00_RS09455 WP_154999609.1 1905993..1906571(-) (comK) [Bacillus haynesii strain P19]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACGGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGAGAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTTCCTACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACCTTTGTCAACGGGGAAACGCTGGAGCTGCCTG
TATCCATCACATCTTTCGAAAACCAGGTATACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATGAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672