Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   H2R00_RS09265 Genome accession   NZ_CP059494
Coordinates   1862189..1865689 (-) Length   1166 a.a.
NCBI ID   WP_182070898.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857189..1870689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS09255 sbcD 1857263..1858444 (-) 1182 WP_182070897.1 exonuclease subunit SbcD -
  H2R00_RS09260 addA 1858510..1862202 (-) 3693 WP_154994078.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  H2R00_RS09265 addB 1862189..1865689 (-) 3501 WP_182070898.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  H2R00_RS09270 modB 1865798..1866454 (-) 657 WP_154994075.1 molybdate ABC transporter permease subunit -
  H2R00_RS09275 modA 1866463..1867218 (-) 756 WP_234113169.1 molybdate ABC transporter substrate-binding protein -
  H2R00_RS09280 - 1867459..1867899 (+) 441 WP_182070899.1 ferritin-like domain-containing protein -
  H2R00_RS09285 - 1868023..1868664 (+) 642 WP_244958327.1 response regulator transcription factor -
  H2R00_RS09290 - 1868661..1870028 (+) 1368 WP_182070900.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134328.38 Da        Isoelectric Point: 5.6787

>NTDB_id=470063 H2R00_RS09265 WP_182070898.1 1862189..1865689(-) (addB) [Bacillus haynesii strain P19]
MGAVFLSGRSGSGKTTFILNEIREKLRNEPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTG
GMNRPFLTGTGIQMLLRRLIEEHKGEFKVYQNASDKSGFTEQVERMLTEFKRHCLQPESIRDMMEGTGKSEYEDERILSD
KLHDLYILYSKLEENLENQYVQSEDYLTLLAEQIPYADEIRNAAVYVDGFHQFTPQEMSVLEQLMVHAEEITFSLTADKP
FTANSPNDLHLFRMTGKAYYDLYQKAKELGLDPSEVRLEETKRHQHHPELQHLERYFDERPAKPYPGRTESLRIMQASNR
RTEIEGIAREIHSLIRQGRFRLRDIAVIARNVEDYKDTIKEVFKDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRY
EAVFRCVKTELLFPEGQPKERLRGQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGW
IVPPIHRLQKRLKKAETVREMAEAVYLYLEEADVPMKLEQERRLAEESGRIAESRQHEQVWDAVIQLLDEFVEMMGTERI
SFALFQQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLSDDDREWLKRNGAQLA
ATGREQLLDENFLIYMTLSSPSEKLYVSYPIADSEGKTLLPSTVVKRLNELFPDGEEKMLIHEPEQLDDDAQLEFLVNKG
AALSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRDLYGEHIQGSVSRMETFKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISDRLHELKMDWRDLTKAQCETLSSDAVERLAPKLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGMKASPAGVLYFHVHDPMIQASVPLGLDEIEKEIFKKFKMKGL
LLGDQEAVKLMDTTLEQGRSNIISAGLKKDGSLRSDSDVVAEEDFHVLRRHIRRTFQKAGEEITDGKVSIEPYKLKDRTP
CTYCSYRSFCQFDESLEENEYRILKPEKDNVILERLKKEDEADGDF

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=470063 H2R00_RS09265 WP_182070898.1 1862189..1865689(-) (addB) [Bacillus haynesii strain P19]
GTGGGAGCAGTATTTTTATCAGGCAGATCCGGGAGTGGAAAAACGACCTTTATCCTGAATGAAATCAGAGAAAAACTTCG
CAATGAACCGCTTGGAAAACCGATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTAGCAAAA
CACCCGATTTGGGCGGAACCATCCGCGCCCAGGTGTACAGTTTTTCAAGGCTTGCCTGGCGAGTGCTCCAACATACCGGA
GGCATGAACCGGCCGTTTTTGACGGGGACGGGCATTCAGATGCTGCTGCGGAGACTGATTGAAGAGCATAAGGGCGAGTT
TAAAGTCTATCAAAATGCAAGCGATAAAAGCGGATTTACGGAGCAGGTGGAACGGATGCTGACCGAATTTAAACGGCACT
GTCTGCAACCTGAAAGCATCCGGGACATGATGGAAGGGACGGGCAAGTCGGAATACGAAGATGAACGGATTCTTTCCGAT
AAATTGCACGACTTATATATTTTGTACAGCAAGCTTGAGGAAAATCTGGAGAATCAATATGTTCAATCTGAAGATTATTT
GACGCTTTTGGCCGAGCAGATTCCGTATGCGGATGAGATTAGAAACGCTGCCGTTTATGTGGACGGATTTCATCAATTTA
CGCCTCAGGAGATGAGCGTACTAGAACAGCTGATGGTACATGCGGAAGAGATCACGTTTTCGCTGACGGCTGATAAGCCG
TTTACGGCCAACAGCCCGAATGATCTCCATCTGTTCAGGATGACCGGGAAGGCGTACTATGACCTTTACCAGAAGGCGAA
GGAACTCGGCCTTGATCCGTCTGAAGTGCGGCTGGAAGAGACGAAACGGCACCAACATCATCCGGAGCTTCAGCATCTTG
AACGCTATTTTGACGAAAGGCCTGCAAAACCGTATCCCGGACGGACGGAATCGCTCCGCATCATGCAGGCGTCGAACAGA
AGAACCGAGATTGAAGGAATTGCGCGCGAGATTCATTCTTTAATCCGCCAGGGCCGTTTCCGGCTCAGGGATATCGCCGT
TATCGCCCGCAATGTCGAAGATTATAAAGATACGATAAAAGAAGTTTTTAAAGACTGCGAACTTCCTTTTTTCATAGACG
GCAAGGAATCGATGCAAAATCATCCGCTTATTGAGCTGATCCGTTCGACGCTTGATATCATTAAAGGAAACTGGCGGTAT
GAAGCGGTGTTCCGCTGTGTTAAAACGGAACTTTTATTCCCGGAAGGACAACCGAAGGAACGGCTGCGCGGACAGATTGA
CCAGCTTGAAAACTACTGTATTGCGTATGGCATTAAAGGAGACAGATGGACAAGCAAAGATCCGTTTGTTTACAGAAGAT
ACGCTTCACTGGATGAGGATTTTGCCAAGACAGACAAAGAGATTGAAACGGAAAATATGCTCAATGAACTAAAGGGCTGG
ATCGTTCCGCCGATCCACAGGCTGCAGAAGCGCTTGAAAAAAGCTGAAACAGTCAGGGAAATGGCCGAAGCCGTTTACCT
TTATCTTGAAGAAGCCGATGTTCCGATGAAGCTTGAACAGGAAAGGCGGCTAGCCGAAGAAAGCGGAAGAATTGCCGAGT
CGCGCCAGCATGAGCAAGTATGGGATGCCGTTATTCAACTGTTGGACGAGTTTGTTGAAATGATGGGCACAGAGCGGATA
TCGTTTGCTTTATTTCAGCAAATGATCGAAACCGGATTGGAGTCTTTGAAATTCGCGCTGATTCCGCCCGCACTTGATCA
AGTGTTTATCGGCAATATGGACCTTTCAAGAATGTACGGCACGAAATGCACATTTCTCATCGGTGTAAACGACGGCATAC
TTCCGGCGAGGCCTGCGGATGACGGCGTGCTTTCAGACGATGACCGGGAGTGGCTGAAACGAAACGGCGCACAGCTTGCG
GCAACAGGGCGAGAGCAGCTGTTGGACGAGAATTTTCTGATCTATATGACGCTTTCAAGCCCGTCTGAAAAGCTATATGT
CTCCTATCCGATCGCGGATTCGGAAGGGAAGACGCTGCTTCCTTCAACAGTGGTGAAGCGTCTGAATGAACTGTTCCCGG
ATGGCGAAGAAAAGATGCTGATTCATGAACCCGAGCAGCTGGACGATGATGCCCAGCTTGAATTTCTCGTGAATAAAGGC
GCCGCCTTGAGCCATTTGGCAGGGCAGCTCGGCATCTGGACGAGGCAGTATGCGATCAGCGATGTATGGTGGAGTACATA
CAATTTTTTAATGAATGAGCCTGACCGCATCTTTTCTCAAAACATCCTGTCCAGCCTGTTTTTCAGAAACAAGGTTGAAA
ACTTGAACCGGCATGTGAGCCGCGATTTGTACGGGGAGCACATTCAGGGAAGCGTGTCGCGGATGGAGACGTTCAAAGCC
TGTCCGTTTTCTCATTTTGCTTCGCACGGTTTAAAGCTGAAGGAACGCCAATTTTTCAAGCTTGAAGCTCCGGATATCGG
TCAGCTGTTCCACTCGGCGCTGAAGCTGATTTCAGACCGTCTTCACGAGCTTAAAATGGATTGGCGCGACTTAACGAAAG
CCCAATGCGAGACTTTGTCAAGCGATGCGGTTGAACGGCTCGCGCCTAAACTGCAAAAGGAGATTCTGCTCAGCTCGAAC
CGTCATCATTATGTGAAGCAGAAGCTGCAAAAAATCATTGCCAGGGTATCGGGCATTTTAAGTGAGCATGCAAAGGCCAG
CGGATTTGCTCCCGTCGGCATAGAGCTCGGATTCGGGGGGAAAGGTCCGCTTCCTCCAATGCGTTTTACACTGAAGAACG
GCTGCACGATGGAGCTTGTCGGCCGGATCGACAGAGTGGATAAAGCGGAGAGCTCAAAAGGGCTGCTGCTTAGGATTGTC
GACTATAAATCAAGCGATAAAGGCCTCGATTTGGCCGAGGTCTATTACGGCCTCGCCCTGCAAATGCTGACATATCTCGA
TTTGTCGATCACGCATTCAACCGATTGGCTCGGCATGAAAGCATCCCCGGCAGGCGTGCTCTATTTTCATGTGCACGATC
CGATGATCCAGGCTTCGGTGCCGCTCGGCCTTGATGAGATAGAAAAAGAGATTTTCAAAAAGTTCAAGATGAAAGGGCTG
CTCTTGGGAGACCAGGAAGCGGTCAAGCTGATGGACACCACACTGGAACAAGGCAGGTCGAACATCATCAGCGCCGGTTT
GAAAAAAGACGGTTCGCTCCGTTCAGATTCTGACGTTGTTGCAGAAGAGGATTTTCATGTATTGAGGCGTCATATCCGCC
GGACATTTCAGAAGGCCGGCGAGGAGATCACAGACGGCAAAGTGTCGATCGAGCCTTACAAGCTAAAAGACCGGACACCG
TGCACATATTGTTCGTACCGGTCATTCTGCCAGTTTGACGAATCGCTTGAGGAAAATGAATATCGGATATTAAAACCTGA
AAAAGACAACGTGATATTGGAGCGGCTGAAAAAGGAGGATGAGGCAGATGGAGATTTCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

73.906

99.914

0.738