Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H2R00_RS07265 Genome accession   NZ_CP059494
Coordinates   1478620..1478907 (-) Length   95 a.a.
NCBI ID   WP_182070737.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473620..1483907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS07250 ade 1474540..1476261 (-) 1722 WP_182070736.1 adenine deaminase -
  H2R00_RS07255 - 1476389..1477051 (-) 663 WP_020451237.1 TrkA family potassium uptake protein -
  H2R00_RS07260 - 1477115..1478452 (-) 1338 WP_154999113.1 ATP-binding protein -
  H2R00_RS07265 abrB 1478620..1478907 (-) 288 WP_182070737.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H2R00_RS07270 mreBH 1479214..1480221 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  H2R00_RS07275 - 1480295..1480426 (+) 132 WP_003181378.1 protein YkpC -
  H2R00_RS07280 - 1480517..1481749 (+) 1233 WP_182070738.1 aminopeptidase -
  H2R00_RS07285 - 1482149..1482523 (-) 375 WP_154999110.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10540.34 Da        Isoelectric Point: 5.8808

>NTDB_id=470050 H2R00_RS07265 WP_182070737.1 1478620..1478907(-) (abrB) [Bacillus haynesii strain P19]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEINAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=470050 H2R00_RS07265 WP_182070737.1 1478620..1478907(-) (abrB) [Bacillus haynesii strain P19]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAATGGAAAAATTACGCTGAGTCCTGAAGGAGCCGAA
TTGCTTTTGGAAGAAATCAATGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537