Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H2R00_RS05370 Genome accession   NZ_CP059494
Coordinates   1107519..1107947 (-) Length   142 a.a.
NCBI ID   WP_154995150.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1102519..1112947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS05345 tkt 1103101..1105104 (-) 2004 WP_182070616.1 transketolase -
  H2R00_RS05350 - 1105271..1105504 (-) 234 WP_003182231.1 DUF896 domain-containing protein -
  H2R00_RS05355 - 1105570..1106217 (-) 648 WP_043926443.1 recombinase family protein -
  H2R00_RS05360 yneA 1106236..1106547 (-) 312 WP_154995147.1 cell division suppressor protein YneA -
  H2R00_RS05365 lexA 1106699..1107322 (+) 624 WP_154995148.1 transcriptional repressor LexA -
  H2R00_RS05370 nucA/comI 1107519..1107947 (-) 429 WP_154995150.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H2R00_RS05375 - 1108274..1109113 (-) 840 WP_154995152.1 thymidylate synthase -
  H2R00_RS05380 - 1109173..1109934 (-) 762 WP_182070617.1 hypothetical protein -
  H2R00_RS05385 - 1110023..1110856 (-) 834 WP_003182213.1 prohibitin family protein -
  H2R00_RS05390 - 1110849..1110989 (-) 141 WP_023857597.1 hypothetical protein -
  H2R00_RS05395 wrbA 1111314..1111928 (-) 615 WP_043926462.1 NAD(P)H:quinone oxidoreductase -
  H2R00_RS05400 - 1112130..1112738 (-) 609 WP_182070618.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15339.28 Da        Isoelectric Point: 7.8703

>NTDB_id=470043 H2R00_RS05370 WP_154995150.1 1107519..1107947(-) (nucA/comI) [Bacillus haynesii strain P19]
MIKKWAVHLLFSALVLLGLSGGAAYSPQQAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGYADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=470043 H2R00_RS05370 WP_154995150.1 1107519..1107947(-) (nucA/comI) [Bacillus haynesii strain P19]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCAAGCCGAAGGTGCTGCAAGGTATGATGACATATTGTATTTTCCGGCATCGCGCTATCCAGAAACCGGCGCTCATA
TAAGCGATGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
TTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGATGAATGGCCGATGGCCATGTGTGAAGAAGGTGGCAAAGGAGC
GTCGGTCAGATATGTAAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTACGCCGACG
GGACCAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

88.732

0.528