Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   H2R00_RS02205 Genome accession   NZ_CP059494
Coordinates   425739..426773 (+) Length   344 a.a.
NCBI ID   WP_154997145.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420739..431773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS02165 - 421232..421546 (+) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  H2R00_RS02170 - 421606..421779 (-) 174 WP_003183486.1 DUF2759 domain-containing protein -
  H2R00_RS02175 - 421935..422573 (+) 639 WP_182070384.1 MBL fold metallo-hydrolase -
  H2R00_RS02180 - 422609..422854 (-) 246 WP_020452180.1 DUF2626 domain-containing protein -
  H2R00_RS02185 - 423065..423442 (+) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  H2R00_RS02195 - 423687..424526 (+) 840 WP_154997141.1 STAS domain-containing protein -
  H2R00_RS02200 comGA 424685..425749 (+) 1065 WP_154997143.1 competence type IV pilus ATPase ComGA Machinery gene
  H2R00_RS02205 comGB 425739..426773 (+) 1035 WP_154997145.1 competence type IV pilus assembly protein ComGB Machinery gene
  H2R00_RS02210 comGC 426787..427080 (+) 294 WP_043927885.1 competence type IV pilus major pilin ComGC Machinery gene
  H2R00_RS02215 comGD 427110..427523 (+) 414 WP_244958271.1 competence type IV pilus minor pilin ComGD -
  H2R00_RS02220 comGE 427507..427854 (+) 348 WP_182070386.1 competence type IV pilus minor pilin ComGE -
  H2R00_RS02225 comGF 427880..428251 (+) 372 WP_261763563.1 competence type IV pilus minor pilin ComGF -
  H2R00_RS02230 comGG 428263..428628 (+) 366 WP_154997614.1 competence type IV pilus minor pilin ComGG -
  H2R00_RS02235 - 428717..428899 (+) 183 WP_020452171.1 YqzE family protein -
  H2R00_RS02240 - 428929..429249 (-) 321 WP_076793488.1 YqzG/YhdC family protein -
  H2R00_RS02245 tapA 429526..430254 (+) 729 WP_182070387.1 amyloid fiber anchoring/assembly protein TapA -
  H2R00_RS02250 - 430251..430835 (+) 585 WP_154997620.1 signal peptidase I -
  H2R00_RS02255 - 430908..431702 (+) 795 WP_154997622.1 TasA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39805.92 Da        Isoelectric Point: 9.4858

>NTDB_id=470036 H2R00_RS02205 WP_154997145.1 425739..426773(+) (comGB) [Bacillus haynesii strain P19]
MKIKMKWPVREQADFLKKLGDMMQSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGRPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFLQSGELLHRKIAQTEKLKKAARYPSFLILTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFSVFD
HFYLFFTGLALIAAALSLYYLCSFRHKPPEDKMTFLIRIPLLSQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LSFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMIFILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=470036 H2R00_RS02205 WP_154997145.1 425739..426773(+) (comGB) [Bacillus haynesii strain P19]
ATGAAGATTAAAATGAAGTGGCCCGTCCGAGAACAGGCGGACTTTCTGAAAAAGCTCGGAGACATGATGCAGAGCGGATA
TACGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGGCGGAGAGCAGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGCGTCCTGTGTTTCAAGTGCTTGAAATGATTTCATTTCATAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTCTGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAACCGAAAA
ATTAAAGAAAGCCGCCAGATATCCCTCGTTTTTAATTTTAACGGTCTGCGTCATCATCTCTATTATGAAATCAGCAATCG
TCCCGCAATTTTCCGCCATCTATGAGTCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTCTGTTTTCGAT
CATTTTTATCTTTTTTTCACGGGACTGGCGTTGATTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGACCTTTCTCATAAGAATTCCCTTGCTGAGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGTCAGCCGTTT
TTATCATTTCATAAAAATGAAGCGAAGCGCCTGATCGAGCGGCTGAAACAGGGGGAGAGTCTCGAGCAGATGCTCGCCGG
ACATCCGTTTTATGAAAATGATTTGGCAAAGGCTGTGGCTCACGGCCAATTAAACGGACACTTATACAGAGAACTGTATT
CATATAGTCAATTTTTAATTGAGCGCCTTGAAAGGAAAGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTCATTCTTTATTTGTCTATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(15-135)

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.347

93.895

0.529