Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H2R00_RS01820 Genome accession   NZ_CP059494
Coordinates   359464..360234 (+) Length   256 a.a.
NCBI ID   WP_182070355.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 354464..365234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS01790 - 354806..356860 (+) 2055 WP_234113243.1 HD family phosphohydrolase -
  H2R00_RS01795 ybeY 356857..357333 (+) 477 WP_182070354.1 rRNA maturation RNase YbeY -
  H2R00_RS01800 - 357311..357691 (+) 381 WP_154994354.1 diacylglycerol kinase family protein -
  H2R00_RS01805 - 357824..358234 (+) 411 WP_043928563.1 cytidine deaminase -
  H2R00_RS01810 era 358215..359120 (+) 906 WP_023855242.1 GTPase Era -
  H2R00_RS01815 - 359283..359426 (+) 144 WP_003183626.1 YqzL family protein -
  H2R00_RS01820 recO 359464..360234 (+) 771 WP_182070355.1 DNA repair protein RecO Machinery gene
  H2R00_RS01825 glyQ 360566..361453 (+) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  H2R00_RS01830 glyS 361446..363485 (+) 2040 WP_182070356.1 glycine--tRNA ligase subunit beta -
  H2R00_RS01835 - 363683..364321 (+) 639 WP_094777426.1 helix-turn-helix transcriptional regulator -
  H2R00_RS01840 - 364347..365159 (+) 813 WP_154997315.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29457.12 Da        Isoelectric Point: 8.5644

>NTDB_id=470034 H2R00_RS01820 WP_182070355.1 359464..360234(+) (recO) [Bacillus haynesii strain P19]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSAGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=470034 H2R00_RS01820 WP_182070355.1 359464..360234(+) (recO) [Bacillus haynesii strain P19]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCTAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGTAAATCAGCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCGCTGAATTAATTGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCTGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CAAAGGATGAGCTGAAAAGAGTCATTCAGACGTACTATGACGAGTATTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGTGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.734

100

0.777