Detailed information NTG0470009

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JSQ74_RS09340
• Genome accession: NZ_CP069710
• Coordinates: 1936590..1937582 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EA2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1931590..1942582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSQ74_RS09320 (JSQ74_09320)	otnK	1932365..1933627 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
JSQ74_RS09325 (JSQ74_09325)	ygbL	1933624..1934262 (+)	639	WP_001278994.1	aldolase	-
JSQ74_RS09330 (JSQ74_09330)	ygbM	1934267..1935043 (+)	777	WP_204084381.1	HPr family phosphocarrier protein	-
JSQ74_RS09335 (JSQ74_09335)	ygbN	1935132..1936496 (+)	1365	WP_000104429.1	GntP family transporter	-
JSQ74_RS09340 (JSQ74_09340)	rpoS	1936590..1937582 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JSQ74_RS09345 (JSQ74_09345)	nlpD	1937645..1938739 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JSQ74_RS09350 (JSQ74_09350)	pcm	1938924..1939550 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JSQ74_RS09355 (JSQ74_09355)	surE	1939544..1940305 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JSQ74_RS09360 (JSQ74_09360)	truD	1940286..1941335 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JSQ74_RS09365 (JSQ74_09365)	ispF	1941332..1941811 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JSQ74_RS09370 (JSQ74_09370)	ispD	1941811..1942521 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=470009 JSQ74_RS09340 WP_000081550.1 1936590..1937582(-) (rpoS) [Escherichia coli strain EA2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=470009 JSQ74_RS09340 WP_000081550.1 1936590..1937582(-) (rpoS) [Escherichia coli strain EA2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715