Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JSQ74_RS05695 Genome accession   NZ_CP069710
Coordinates   1158873..1160300 (+) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain EA2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153873..1165300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ74_RS05665 (JSQ74_05665) - 1154414..1154773 (-) 360 Protein_1128 cobalamin biosynthesis protein -
  JSQ74_RS05670 (JSQ74_05670) - 1154752..1155048 (+) 297 Protein_1129 EutP/PduV family microcompartment system protein -
  JSQ74_RS05675 (JSQ74_05675) tmaR 1155149..1155478 (-) 330 WP_000450409.1 DUF496 family protein -
  JSQ74_RS05680 (JSQ74_05680) yeeA 1155650..1156708 (-) 1059 WP_001200891.1 FUSC family protein -
  JSQ74_RS05685 (JSQ74_05685) sbmC 1156906..1157379 (-) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  JSQ74_RS05690 (JSQ74_05690) dacD 1157498..1158664 (-) 1167 WP_096252396.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JSQ74_RS05695 (JSQ74_05695) sbcB 1158873..1160300 (+) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  JSQ74_RS05700 (JSQ74_05700) tsuB 1160343..1160570 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JSQ74_RS05705 (JSQ74_05705) tsuA 1160584..1161642 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  JSQ74_RS05710 (JSQ74_05710) plaP 1161821..1163179 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JSQ74_RS05715 (JSQ74_05715) yoeI 1163169..1163231 (-) 63 WP_010723108.1 membrane protein YoeI -
  JSQ74_RS05720 (JSQ74_05720) yeeY 1163446..1164375 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  JSQ74_RS05725 (JSQ74_05725) yeeZ 1164421..1165245 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=469996 JSQ74_RS05695 WP_000980582.1 1158873..1160300(+) (sbcB) [Escherichia coli strain EA2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=469996 JSQ74_RS05695 WP_000980582.1 1158873..1160300(+) (sbcB) [Escherichia coli strain EA2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581