Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HMPREF0462_RS00530 Genome accession   NC_017375
Coordinates   105224..105508 (-) Length   94 a.a.
NCBI ID   WP_000736477.1    Uniprot ID   -
Organism   Helicobacter pylori 83     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100224..110508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0462_RS00505 (HMPREF0462_0106) - 100865..101998 (-) 1134 WP_000067667.1 VirB8/TrbF family protein -
  HMPREF0462_RS00510 (HMPREF0462_0107) - 101991..102125 (-) 135 WP_000738749.1 hypothetical protein -
  HMPREF0462_RS00515 (HMPREF0462_0108) - 102127..104703 (-) 2577 WP_000462623.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HMPREF0462_RS00520 (HMPREF0462_0109) - 104703..104939 (-) 237 WP_001183707.1 hypothetical protein -
  HMPREF0462_RS00525 (HMPREF0462_0110) comB3 104950..105213 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  HMPREF0462_RS00530 (HMPREF0462_0111) comB2 105224..105508 (-) 285 WP_000736477.1 TrbC/VirB2 family protein Machinery gene
  HMPREF0462_RS00535 (HMPREF0462_0112) - 105505..105984 (-) 480 WP_000571123.1 hypothetical protein -
  HMPREF0462_RS00540 (HMPREF0462_0113) - 106088..106875 (-) 788 Protein_102 integrase -
  HMPREF0462_RS00545 - 106930..107097 (+) 168 Protein_103 SMI1/KNR4 family protein -
  HMPREF0462_RS00550 (HMPREF0462_0115) - 107099..107449 (+) 351 WP_000491324.1 hypothetical protein -
  HMPREF0462_RS00555 (HMPREF0462_0116) - 107446..109871 (+) 2426 Protein_105 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.94 Da        Isoelectric Point: 10.4929

>NTDB_id=46999 HMPREF0462_RS00530 WP_000736477.1 105224..105508(-) (comB2) [Helicobacter pylori 83]
MKKLSHFRELIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=46999 HMPREF0462_RS00530 WP_000736477.1 105224..105508(-) (comB2) [Helicobacter pylori 83]
ATGAAAAAATTAAGTCATTTTAGAGAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.044

96.809

0.543

Multiple sequence alignment