Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HMPREF0462_RS00525 Genome accession   NC_017375
Coordinates   104950..105213 (-) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori 83     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99950..110213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0462_RS00505 (HMPREF0462_0106) - 100865..101998 (-) 1134 WP_000067667.1 VirB8/TrbF family protein -
  HMPREF0462_RS00510 (HMPREF0462_0107) - 101991..102125 (-) 135 WP_000738749.1 hypothetical protein -
  HMPREF0462_RS00515 (HMPREF0462_0108) - 102127..104703 (-) 2577 WP_000462623.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HMPREF0462_RS00520 (HMPREF0462_0109) - 104703..104939 (-) 237 WP_001183707.1 hypothetical protein -
  HMPREF0462_RS00525 (HMPREF0462_0110) comB3 104950..105213 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  HMPREF0462_RS00530 (HMPREF0462_0111) comB2 105224..105508 (-) 285 WP_000736477.1 TrbC/VirB2 family protein Machinery gene
  HMPREF0462_RS00535 (HMPREF0462_0112) - 105505..105984 (-) 480 WP_000571123.1 hypothetical protein -
  HMPREF0462_RS00540 (HMPREF0462_0113) - 106088..106875 (-) 788 Protein_102 integrase -
  HMPREF0462_RS00545 - 106930..107097 (+) 168 Protein_103 SMI1/KNR4 family protein -
  HMPREF0462_RS00550 (HMPREF0462_0115) - 107099..107449 (+) 351 WP_000491324.1 hypothetical protein -
  HMPREF0462_RS00555 (HMPREF0462_0116) - 107446..109871 (+) 2426 Protein_105 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=46998 HMPREF0462_RS00525 WP_001177712.1 104950..105213(-) (comB3) [Helicobacter pylori 83]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46998 HMPREF0462_RS00525 WP_001177712.1 104950..105213(-) (comB3) [Helicobacter pylori 83]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment