Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1R18_RS16320 Genome accession   NZ_CP059481
Coordinates   3185266..3185892 (-) Length   208 a.a.
NCBI ID   WP_014883254.1    Uniprot ID   A0A2W0GP96
Organism   Enterobacter kobei strain IB2020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180266..3190892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R18_RS16305 (H1R18_16300) helD 3180503..3182557 (-) 2055 WP_050862057.1 DNA helicase IV -
  H1R18_RS16310 (H1R18_16305) - 3182681..3183127 (+) 447 WP_014883256.1 YccF domain-containing protein -
  H1R18_RS16315 (H1R18_16310) yccS 3183147..3185309 (+) 2163 WP_050862058.1 YccS family putative transporter -
  H1R18_RS16320 (H1R18_16315) sxy/tfoX 3185266..3185892 (-) 627 WP_014883254.1 TfoX/Sxy family DNA transformation protein Regulator
  H1R18_RS16325 (H1R18_16320) sulA 3186110..3186619 (+) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  H1R18_RS16330 (H1R18_16325) ompA 3186975..3188030 (+) 1056 WP_014883252.1 porin OmpA -
  H1R18_RS16335 (H1R18_16330) matP 3188095..3188547 (-) 453 WP_023332611.1 macrodomain Ter protein MatP -
  H1R18_RS16340 (H1R18_16335) - 3188734..3190494 (+) 1761 WP_110820308.1 AAA family ATPase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23928.55 Da        Isoelectric Point: 9.0691

>NTDB_id=469986 H1R18_RS16320 WP_014883254.1 3185266..3185892(-) (sxy/tfoX) [Enterobacter kobei strain IB2020]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=469986 H1R18_RS16320 WP_014883254.1 3185266..3185892(-) (sxy/tfoX) [Enterobacter kobei strain IB2020]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCCCT
GTTCGGTGGCTATACCCTGGCGGTAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCGTGTG
AAGAAAGCGCAAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGTTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACTTTTCAGCTTGAGGTATTACTTT
TCGAAGCGGGCATTACTAACGAAGAGACGCTGCGGGCGCTGGGTGCCAGGGAGTGCTGGTTGAAAATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTTGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2W0GP96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562