Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H1D55_RS13370 Genome accession   NZ_CP059474
Coordinates   2861468..2861794 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain M175-3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2856468..2866794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS13345 hemC 2857084..2858001 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  H1D55_RS13350 - 2858006..2858773 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  H1D55_RS13355 - 2858782..2859621 (+) 840 WP_001230201.1 hypothetical protein -
  H1D55_RS13360 - 2859631..2860824 (+) 1194 WP_000681780.1 membrane protein -
  H1D55_RS13365 - 2860832..2861273 (+) 442 Protein_2606 acyl-CoA thioesterase -
  H1D55_RS13370 hns 2861468..2861794 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  H1D55_RS13375 gspN 2862127..2862870 (+) 744 WP_000730343.1 type II secretion system protein N -
  H1D55_RS13380 - 2862870..2863706 (+) 837 WP_000870031.1 type II secretion system protein N -
  H1D55_RS13385 gspD 2863748..2866018 (+) 2271 WP_001196431.1 type II secretion system secretin GspD -
  H1D55_RS13390 - 2866059..2866688 (+) 630 WP_000219966.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=469941 H1D55_RS13370 WP_000801427.1 2861468..2861794(+) (hns) [Acinetobacter baumannii strain M175-3]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=469941 H1D55_RS13370 WP_000801427.1 2861468..2861794(+) (hns) [Acinetobacter baumannii strain M175-3]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1