Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HP2017_RS06485 Genome accession   NC_017374
Coordinates   1321467..1322780 (-) Length   437 a.a.
NCBI ID   WP_000653575.1    Uniprot ID   -
Organism   Helicobacter pylori 2017     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316467..1327780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2017_RS06455 (hp2017_1316) nadC 1316930..1317751 (-) 822 WP_000405960.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HP2017_RS06460 (hp2017_1317) nadA 1317751..1318761 (-) 1011 WP_001141845.1 quinolinate synthase NadA -
  HP2017_RS06465 (hp2017_1318) - 1318748..1319554 (-) 807 WP_000226151.1 phosphatidylserine decarboxylase -
  HP2017_RS06470 (hp2017_1319) - 1319548..1320054 (-) 507 WP_000953095.1 DUF6115 domain-containing protein -
  HP2017_RS06475 (hp2017_1320) - 1320067..1320561 (-) 495 WP_014534113.1 hypothetical protein -
  HP2017_RS06480 (hp2017_1321) mqnP 1320554..1321396 (-) 843 WP_230078253.1 menaquinone biosynthesis prenyltransferase MqnP -
  HP2017_RS06485 (hp2017_1322) comEC/comE3 1321467..1322780 (-) 1314 WP_000653575.1 ComEC/Rec2 family competence protein Machinery gene
  HP2017_RS06490 (hp2017_1323) - 1322777..1324237 (-) 1461 WP_000349678.1 replicative DNA helicase -
  HP2017_RS06495 (hp2017_1324) - 1324248..1325642 (-) 1395 WP_000954055.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HP2017_RS08125 crdS 1325645..1326814 (-) 1170 WP_193365304.1 copper-sensing histidine kinase CrdS -
  HP2017_RS08290 crdR 1326794..1327303 (-) 510 Protein_1256 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50105.85 Da        Isoelectric Point: 9.8135

>NTDB_id=46988 HP2017_RS06485 WP_000653575.1 1321467..1322780(-) (comEC/comE3) [Helicobacter pylori 2017]
MKDKTFQGAFELLATPKEYSWCGVVLSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQQRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIILS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46988 HP2017_RS06485 WP_000653575.1 1321467..1322780(-) (comEC/comE3) [Helicobacter pylori 2017]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTCATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAATCTCTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATCCTGTTGCAATACCCTAAAACTAAAGATCAAAAAACTTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCACCCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCGCGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAACAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTAAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTCTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCATTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTGTTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938

Multiple sequence alignment