Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H1R75_RS09085 Genome accession   NZ_CP059471
Coordinates   1797058..1798419 (-) Length   453 a.a.
NCBI ID   WP_033153501.1    Uniprot ID   A0A6G8HZM5
Organism   Streptococcus equinus strain MDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1792058..1803419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS09065 (H1R75_09065) - 1792487..1793653 (-) 1167 WP_021143228.1 CynX/NimT family MFS transporter -
  H1R75_RS09070 (H1R75_09070) gltX 1793850..1795307 (-) 1458 WP_074639614.1 glutamate--tRNA ligase -
  H1R75_RS09075 (H1R75_09075) - 1795486..1796412 (-) 927 WP_021143230.1 aldo/keto reductase -
  H1R75_RS09080 (H1R75_09080) - 1796441..1796938 (-) 498 WP_004233355.1 beta-class carbonic anhydrase -
  H1R75_RS09085 (H1R75_09085) radA 1797058..1798419 (-) 1362 WP_033153501.1 DNA repair protein RadA Machinery gene
  H1R75_RS09090 (H1R75_09090) - 1798455..1798901 (-) 447 WP_021143233.1 dUTP diphosphatase -
  H1R75_RS09095 (H1R75_09095) - 1798928..1799695 (-) 768 WP_074629854.1 epoxyqueuosine reductase QueH -
  H1R75_RS09100 (H1R75_09100) - 1799900..1800916 (+) 1017 WP_024344391.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  H1R75_RS09105 (H1R75_09105) galU 1800988..1801908 (+) 921 WP_021143237.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H1R75_RS09110 (H1R75_09110) - 1801959..1802630 (-) 672 WP_182001397.1 rhomboid family intramembrane serine protease -
  H1R75_RS09115 (H1R75_09115) - 1802627..1803154 (-) 528 WP_027968320.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.3749

>NTDB_id=469853 H1R75_RS09085 WP_033153501.1 1797058..1798419(-) (radA) [Streptococcus equinus strain MDC1]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=469853 H1R75_RS09085 WP_033153501.1 1797058..1798419(-) (radA) [Streptococcus equinus strain MDC1]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTTGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCACGCACAAAGACTGGCATGGATGAATTTAACCGCGTG
CTCGGTGGTGGTGTGGTGCCAGGTAGTCTGGTGCTTATCGGTGGTGACCCAGGTATCGGGAAATCAACGCTTCTTTTGCA
GGTTTCGATTCAGCTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTTCGCA
GTGAACGCCTTGGTGACATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCAATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTGATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
ATCTCAAGTGCGTGAAGTGACGGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTCATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCTGGTCCACGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACCTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAGGTTTTCTTGGAAGAACGCTTGGATGGCGCGACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCAATTTTGGCGGAGGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGCACAACGACTGGGCTTGATTTCAATCGTGTTAGTCTGATTATGGCGGTACTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCTGCTGGTGGTGTCAAACTTGATGAGCCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCAACAAATCCACAAGAAGCTTTTATCGGTGAAATTGGCTTGACAGGTGAAATTCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
GGTTGGTATTGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGTGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62