Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JSQ86_RS02060 Genome accession   NZ_CP069707
Coordinates   443390..444067 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain E41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438390..449067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ86_RS02045 (JSQ86_02045) chiA 439756..442450 (+) 2695 Protein_414 bifunctional chitinase/lysozyme -
  JSQ86_RS02050 (JSQ86_02050) bfd 442619..442813 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  JSQ86_RS02055 (JSQ86_02055) bfr 442885..443361 (+) 477 WP_000675504.1 bacterioferritin -
  JSQ86_RS02060 (JSQ86_02060) pilD 443390..444067 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  JSQ86_RS02065 (JSQ86_02065) gspM 444067..444528 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  JSQ86_RS02070 (JSQ86_02070) gspL 444525..445688 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  JSQ86_RS02075 (JSQ86_02075) gspK 445703..446686 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  JSQ86_RS02080 (JSQ86_02080) gspJ 446679..447266 (-) 588 WP_113078774.1 type II secretion system minor pseudopilin GspJ -
  JSQ86_RS02085 (JSQ86_02085) gspI 447259..447636 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  JSQ86_RS02090 (JSQ86_02090) gspH 447633..448142 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  JSQ86_RS02095 (JSQ86_02095) gspG 448150..448587 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=469825 JSQ86_RS02060 WP_000178161.1 443390..444067(-) (pilD) [Escherichia coli strain E41]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=469825 JSQ86_RS02060 WP_000178161.1 443390..444067(-) (pilD) [Escherichia coli strain E41]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCTCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378