Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H1R75_RS03700 Genome accession   NZ_CP059471
Coordinates   671297..673099 (+) Length   600 a.a.
NCBI ID   WP_182001704.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 666297..678099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS03675 (H1R75_03675) queA 667008..668036 (-) 1029 WP_182001701.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H1R75_RS03680 (H1R75_03680) - 668196..668702 (+) 507 WP_021141923.1 VIT1/CCC1 transporter family protein -
  H1R75_RS03685 (H1R75_03685) nagB 668833..669536 (+) 704 Protein_657 glucosamine-6-phosphate deaminase -
  H1R75_RS03690 (H1R75_03690) - 669569..670285 (+) 717 WP_182001702.1 pseudouridine synthase -
  H1R75_RS03695 (H1R75_03695) - 670335..671297 (+) 963 WP_182001703.1 competence protein CoiA -
  H1R75_RS03700 (H1R75_03700) pepF 671297..673099 (+) 1803 WP_182001704.1 oligoendopeptidase F Regulator
  H1R75_RS03705 (H1R75_03705) - 673169..673684 (+) 516 WP_182001705.1 GNAT family N-acetyltransferase -
  H1R75_RS03710 (H1R75_03710) - 673686..674297 (+) 612 WP_182001706.1 HAD-IA family hydrolase -
  H1R75_RS03715 (H1R75_03715) - 674349..675050 (+) 702 WP_004230901.1 O-methyltransferase -
  H1R75_RS03720 (H1R75_03720) - 675119..676159 (+) 1041 WP_182001707.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69305.30 Da        Isoelectric Point: 4.6623

>NTDB_id=469822 H1R75_RS03700 WP_182001704.1 671297..673099(+) (pepF) [Streptococcus equinus strain MDC1]
MSDNRSHIDEKYKWDLSTVFATDDAWEEALAELDSDLEDAKKFKGHLIESSKTLLDITESYLELSRRLEKVYVYASMKND
QDTTVAKYQEFEAKATTLYAKYSEVFAFYEPELMQLSQDDFAKFVAETPALSAYAHFFEKLFKRQEHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQYQHTYAKTLQTNVKVH
NFDARVHHFKSAREAALSANFIPESVYDTLIERVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLSVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKGTIFRQAQFAEFEDIIHKADQNGEVLTSEY
LNGIYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTSDDINRYLDYLKAGNSDYPL
NVIKKAGVDMTSSDYLDAAFKIFEERLNELETLVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=469822 H1R75_RS03700 WP_182001704.1 671297..673099(+) (pepF) [Streptococcus equinus strain MDC1]
ATGTCAGATAATCGTAGTCATATTGATGAAAAGTATAAATGGGATTTGAGTACTGTCTTTGCAACAGATGATGCTTGGGA
AGAAGCACTAGCTGAGCTTGATTCAGATTTAGAAGATGCTAAAAAATTTAAAGGGCACTTGATTGAATCAAGTAAGACTT
TGCTCGATATCACTGAAAGTTATCTTGAATTGTCACGCCGCTTGGAAAAAGTTTATGTCTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTTGCTAAATACCAAGAATTCGAAGCAAAAGCAACAACACTTTACGCCAAATACAGCGAAGTTTTTGC
ATTTTATGAACCAGAATTGATGCAATTATCTCAAGACGATTTCGCCAAATTCGTGGCTGAAACACCAGCGCTTTCAGCTT
ATGCTCATTTCTTTGAAAAACTTTTCAAACGTCAAGAACACGTTTTGTCACAAAAAGAAGAAGAGCTGCTAGCAGGTGCT
CACGAAATCTTTGGTGCAGCTGGAGAGACTTTTGAAATTTTAGATAATGCTGACATTGTCTTTCCTGTTGTTTTGGATGA
TGAGGGCAATGAAGTTCAACTAACACATGGTAACTTCATCAGTCTTTTGGAATCAAAAAATCGCGATGTTCGAAAAGCGG
CTTACGAGGCTATGTATGCTACATACGAACAATATCAACATACTTATGCCAAAACACTTCAAACAAATGTAAAAGTTCAT
AACTTTGATGCTCGTGTTCACCATTTCAAATCAGCGCGTGAAGCAGCACTTTCGGCAAACTTCATTCCTGAATCTGTCTA
CGATACTTTGATTGAACGCGTGAATGCACACTTGCCATTGCTTCATCGTTATGTGGAACTTCGTAAGAAAGTTCTTAAAC
TTGATGATTTGAAAATGTATGATATTCACACACCTTTGTCTGAAATGGATATGAGTTTCACTTACGAGGAAGCTTTAAAA
AAAGCAGAAGAGGTTTTGTCTGTCTTTGGTAAAGATTATTCAGAACGTGTTCATCGAGCTTTCACAGAACGCTGGATTGA
CGTTCATGTCAACAAAGGAAAACGTTCAGGAGCTTATTCTGGTGGGGCTTATGATACAAATGCCTTTATGCTTTTGAACT
GGCAAGATACACTTGATAATCTTTTCACTTTGGTACACGAAACAGGGCACAGCCTTCATTCGACTTTTACGCGTGAAACT
CAACCATACGTTTACGGTGATTACAGCATTTTCTTGGCTGAAATTGCTTCAACGACGAATGAAAATATCTTAACAGAAAC
ACTTTTAAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCACTACTTGGATGGTTTCAAAGGGACTATTT
TCCGTCAAGCACAATTCGCTGAATTTGAAGATATTATCCATAAAGCTGACCAAAATGGTGAAGTCTTGACGAGTGAATAC
CTCAATGGCATTTATGCTGACTTAAATGAAAAATACTACGGACTCAGCAAAGAAGATAATCCAGAAATTCAATACGAATG
GGCACGCATTCCGCATTTCTACTATAATTACTATGTTTATCAATATGCGACAGGTTTTGCGGCAGCAAGTTATCTAGCTG
ATAAAGTAGTTCACGGTACATCAGATGACATCAACCGATACCTTGATTATCTCAAGGCTGGTAATTCTGATTATCCGCTA
AATGTGATTAAAAAAGCTGGTGTGGACATGACAAGCAGTGATTATTTGGATGCTGCATTCAAGATTTTTGAAGAACGTCT
AAATGAATTAGAAACTTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.167

100

0.712